miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 81011 0.69 0.602371
Target:  5'- cGCCuuggUGGUCGAAGCCaGCGGCGcCUa -3'
miRNA:   3'- -CGGua--GCCGGCUUCGG-CGUCGUcGAg -5'
24704 5' -59.5 NC_005264.1 + 104553 0.68 0.612404
Target:  5'- cGCCAUCagaGGaaGAAGCUcuguccaagGCAGCgGGCUCg -3'
miRNA:   3'- -CGGUAG---CCggCUUCGG---------CGUCG-UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 148122 0.68 0.612404
Target:  5'- aUCGUCgGGUCGggGCCGUuaaaguGCucuGCUCg -3'
miRNA:   3'- cGGUAG-CCGGCuuCGGCGu-----CGu--CGAG- -5'
24704 5' -59.5 NC_005264.1 + 123367 0.68 0.612404
Target:  5'- uGCCccuggCGGCUGAGcgcgcGUCGCAGCAuGCUUu -3'
miRNA:   3'- -CGGua---GCCGGCUU-----CGGCGUCGU-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 128655 0.68 0.612404
Target:  5'- uGCCG-CGGCUGcuGUC-CAGCAGCUg -3'
miRNA:   3'- -CGGUaGCCGGCuuCGGcGUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 4340 0.68 0.612404
Target:  5'- uGCCccuggCGGCUGAGcgcgcGUCGCAGCAuGCUUu -3'
miRNA:   3'- -CGGua---GCCGGCUU-----CGGCGUCGU-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 145050 0.68 0.622451
Target:  5'- cGCCAgguaccUUGGCgcucuaGAAGCCGggccgGGCAGCUCu -3'
miRNA:   3'- -CGGU------AGCCGg-----CUUCGGCg----UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 122851 0.68 0.626472
Target:  5'- gGCC--CGGgCGggGCCGCAggaggaaauacgaccGCAGaCUCg -3'
miRNA:   3'- -CGGuaGCCgGCuuCGGCGU---------------CGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 3825 0.68 0.626472
Target:  5'- gGCC--CGGgCGggGCCGCAggaggaaauacgaccGCAGaCUCg -3'
miRNA:   3'- -CGGuaGCCgGCuuCGGCGU---------------CGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 93068 0.68 0.629488
Target:  5'- uGCUG-CGGgaGggGCCGCGGCgaccucggcuucucAGCUCg -3'
miRNA:   3'- -CGGUaGCCggCuuCGGCGUCG--------------UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 123716 0.68 0.632504
Target:  5'- gGCCGgagaGGCCGAAGC-GCAGCAa--- -3'
miRNA:   3'- -CGGUag--CCGGCUUCGgCGUCGUcgag -5'
24704 5' -59.5 NC_005264.1 + 16921 0.68 0.632504
Target:  5'- uGCCcgCGcugacccgccGCCGGAGCUGUucCAGCUCg -3'
miRNA:   3'- -CGGuaGC----------CGGCUUCGGCGucGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 112502 0.68 0.642558
Target:  5'- uGCCGcaggacaaGGUCGAcGCCGCGuacucGCGGCUCc -3'
miRNA:   3'- -CGGUag------CCGGCUuCGGCGU-----CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 126163 0.68 0.642558
Target:  5'- cGCCAUUGcGCCaGAguauggcgcAGCCGCAGguuGGCUUa -3'
miRNA:   3'- -CGGUAGC-CGG-CU---------UCGGCGUCg--UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 21349 0.68 0.642558
Target:  5'- cGCCGg-GGCCGGaugaGGCUGUAGCcguGUUCa -3'
miRNA:   3'- -CGGUagCCGGCU----UCGGCGUCGu--CGAG- -5'
24704 5' -59.5 NC_005264.1 + 152761 0.68 0.6516
Target:  5'- uGCCccCGGCgGGAgauuccGCCGCGGCugcaguuaugaugGGCUCg -3'
miRNA:   3'- -CGGuaGCCGgCUU------CGGCGUCG-------------UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 90928 0.68 0.652604
Target:  5'- cGCCAUUauguuGCCGGAGuuGaAGCGGCUa -3'
miRNA:   3'- -CGGUAGc----CGGCUUCggCgUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 97600 0.68 0.652604
Target:  5'- cGCUuccUCGGCCGcGGCgGCuaCGGCUCa -3'
miRNA:   3'- -CGGu--AGCCGGCuUCGgCGucGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 87703 0.68 0.652604
Target:  5'- gGCCcUCGuggauGCCGAGGCCuuGGUGGCUUu -3'
miRNA:   3'- -CGGuAGC-----CGGCUUCGGcgUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 99854 0.68 0.662634
Target:  5'- cGCCuuggaGUCcGCCaAAGCCGCGGUGGCg- -3'
miRNA:   3'- -CGG-----UAGcCGGcUUCGGCGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.