miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 2842 0.67 0.701448
Target:  5'- gGCCGgucgcgcUCGcGCCGucGcCCGCuGCGGCUg -3'
miRNA:   3'- -CGGU-------AGC-CGGCuuC-GGCGuCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 2990 0.72 0.422279
Target:  5'- uCCAUCGagcGCCGAcugGGCCgGCGGCucGGCUCu -3'
miRNA:   3'- cGGUAGC---CGGCU---UCGG-CGUCG--UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 3258 0.66 0.750831
Target:  5'- uGCUGUCGcuCCaGGAGCCGCAGC-GC-Ca -3'
miRNA:   3'- -CGGUAGCc-GG-CUUCGGCGUCGuCGaG- -5'
24704 5' -59.5 NC_005264.1 + 3825 0.68 0.626472
Target:  5'- gGCC--CGGgCGggGCCGCAggaggaaauacgaccGCAGaCUCg -3'
miRNA:   3'- -CGGuaGCCgGCuuCGGCGU---------------CGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 4340 0.68 0.612404
Target:  5'- uGCCccuggCGGCUGAGcgcgcGUCGCAGCAuGCUUu -3'
miRNA:   3'- -CGGua---GCCGGCUU-----CGGCGUCGU-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 5273 0.69 0.572428
Target:  5'- aGUCG-CGGCCGGacGGCgggGCGGCGGCUg -3'
miRNA:   3'- -CGGUaGCCGGCU--UCGg--CGUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 5513 0.67 0.67264
Target:  5'- uUUGUUGGCCuGAugacAGCCGCGGCGuCUCg -3'
miRNA:   3'- cGGUAGCCGG-CU----UCGGCGUCGUcGAG- -5'
24704 5' -59.5 NC_005264.1 + 6880 0.66 0.760242
Target:  5'- aGCCAgagCGuCCGcGAGCCGCGcagucccagcgcGCGGCUUu -3'
miRNA:   3'- -CGGUa--GCcGGC-UUCGGCGU------------CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 6979 0.73 0.351915
Target:  5'- cGUCGUCGuGUCGGucuccuccucggcguGGcCCGCGGCGGCUCc -3'
miRNA:   3'- -CGGUAGC-CGGCU---------------UC-GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 8225 1.1 0.00117
Target:  5'- gGCCAUCGGCCGAAGCCGCAGCAGCUCc -3'
miRNA:   3'- -CGGUAGCCGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 9724 0.67 0.67264
Target:  5'- aGCCAUUGuGCCc--GCCGCGGCAaacugcggGCUUc -3'
miRNA:   3'- -CGGUAGC-CGGcuuCGGCGUCGU--------CGAG- -5'
24704 5' -59.5 NC_005264.1 + 13358 0.67 0.702434
Target:  5'- -aCGUCggGGCCG-AGCCGgGGCccgcGGCUCc -3'
miRNA:   3'- cgGUAG--CCGGCuUCGGCgUCG----UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 16463 0.67 0.682614
Target:  5'- gGUCAUCGuuCCGAcgacgcAGCCGCGGUGGCc- -3'
miRNA:   3'- -CGGUAGCc-GGCU------UCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 16862 0.66 0.750831
Target:  5'- cGCCGcgcaguucguauUCGcGCCGGcgaaGGUCGCAGCAGa-- -3'
miRNA:   3'- -CGGU------------AGC-CGGCU----UCGGCGUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 16910 0.71 0.485394
Target:  5'- cCCGUCGGCCGcggacgauGGCgGCGGC-GUUCu -3'
miRNA:   3'- cGGUAGCCGGCu-------UCGgCGUCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 16921 0.68 0.632504
Target:  5'- uGCCcgCGcugacccgccGCCGGAGCUGUucCAGCUCg -3'
miRNA:   3'- -CGGuaGC----------CGGCUUCGGCGucGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 16987 0.71 0.44874
Target:  5'- cGCCAUUGGCCcaauaaCGC-GCAGCUCg -3'
miRNA:   3'- -CGGUAGCCGGcuucg-GCGuCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 17676 0.87 0.047036
Target:  5'- aGCCucaggCGcaGCCGAGGCCGCGGCGGCUCg -3'
miRNA:   3'- -CGGua---GC--CGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 19883 0.66 0.731713
Target:  5'- cGCCG-CGGCCGcgcuAGCCauuuCGGguGCUUu -3'
miRNA:   3'- -CGGUaGCCGGCu---UCGGc---GUCguCGAG- -5'
24704 5' -59.5 NC_005264.1 + 21200 0.69 0.59236
Target:  5'- aUCGUCGGCCGcAgugguacuuucGGCCGCGaCGGCUUu -3'
miRNA:   3'- cGGUAGCCGGC-U-----------UCGGCGUcGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.