miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 21349 0.68 0.642558
Target:  5'- cGCCGg-GGCCGGaugaGGCUGUAGCcguGUUCa -3'
miRNA:   3'- -CGGUagCCGGCU----UCGGCGUCGu--CGAG- -5'
24704 5' -59.5 NC_005264.1 + 21364 0.66 0.750831
Target:  5'- gGCCGccUCGGCCGGuggaaagaGGCC-CcGCcGCUCg -3'
miRNA:   3'- -CGGU--AGCCGGCU--------UCGGcGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 24154 0.71 0.476093
Target:  5'- aCCGUCGGCCuGGuAGCUGUgaAGCGGCa- -3'
miRNA:   3'- cGGUAGCCGG-CU-UCGGCG--UCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 24208 0.66 0.731713
Target:  5'- uGCCggUGGCCGAAGCCaGC-GC-GC-Cg -3'
miRNA:   3'- -CGGuaGCCGGCUUCGG-CGuCGuCGaG- -5'
24704 5' -59.5 NC_005264.1 + 25133 0.67 0.692548
Target:  5'- cGCCGugucUCGGCCGAguaguuGGCCGUgAGCgAGgaCg -3'
miRNA:   3'- -CGGU----AGCCGGCU------UCGGCG-UCG-UCgaG- -5'
24704 5' -59.5 NC_005264.1 + 27657 0.68 0.662634
Target:  5'- gGCCAcgcggcgcUCGGaCCGAGGUaCGCGGCuGGcCUCu -3'
miRNA:   3'- -CGGU--------AGCC-GGCUUCG-GCGUCG-UC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 27825 0.72 0.388501
Target:  5'- cGCCAUUGGCCuaGAucgcgccacuGUCGCGGCGGCa- -3'
miRNA:   3'- -CGGUAGCCGG--CUu---------CGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 29123 0.69 0.582377
Target:  5'- gGCUGUCGuGCCaGAGGCagcaccagugCGCGGCGGCa- -3'
miRNA:   3'- -CGGUAGC-CGG-CUUCG----------GCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 30425 0.66 0.747987
Target:  5'- aGCUG-CGGCgGAggaggucucgggggAGCCGCGGgcccCGGCUCg -3'
miRNA:   3'- -CGGUaGCCGgCU--------------UCGGCGUC----GUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 30902 0.67 0.712262
Target:  5'- -gCGUCGGgggaggacugCGAGGCCG-GGCGGCUCg -3'
miRNA:   3'- cgGUAGCCg---------GCUUCGGCgUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 31792 0.69 0.56252
Target:  5'- cGCCuaagggCGGCgGucGCCGCcGCAGgUCg -3'
miRNA:   3'- -CGGua----GCCGgCuuCGGCGuCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 32148 0.66 0.769545
Target:  5'- cCCAUUGGCCuaGAGGCCGCuuaAGUa- -3'
miRNA:   3'- cGGUAGCCGG--CUUCGGCGucgUCGag -5'
24704 5' -59.5 NC_005264.1 + 35485 0.66 0.731713
Target:  5'- uGCCG-CGGCCGA--UCGCGaCGGCUUg -3'
miRNA:   3'- -CGGUaGCCGGCUucGGCGUcGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 35596 0.66 0.777816
Target:  5'- gGCU-UCGGCCGAuGGCCGCGucuccguguccccGgGGUUCu -3'
miRNA:   3'- -CGGuAGCCGGCU-UCGGCGU-------------CgUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 36539 0.73 0.341275
Target:  5'- aGCCAUCGGCCGcgcGCCcgaaAGCGGCa- -3'
miRNA:   3'- -CGGUAGCCGGCuu-CGGcg--UCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 36718 0.69 0.59236
Target:  5'- uGCCAUCGGCUc-AGCCGCcGC-GCa- -3'
miRNA:   3'- -CGGUAGCCGGcuUCGGCGuCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 36755 0.66 0.760242
Target:  5'- cGgCGcCGGCCGgcGCCGUcGCcGCUUg -3'
miRNA:   3'- -CgGUaGCCGGCuuCGGCGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 38655 0.7 0.542851
Target:  5'- aCCGUCGaGauGAuGGCCGCGGCGGCg- -3'
miRNA:   3'- cGGUAGC-CggCU-UCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 40940 0.71 0.457763
Target:  5'- cGCCGcgcccCGGUCGAucgcAGCCGCAGCgGGCg- -3'
miRNA:   3'- -CGGUa----GCCGGCU----UCGGCGUCG-UCGag -5'
24704 5' -59.5 NC_005264.1 + 42145 0.66 0.760242
Target:  5'- gGCUuuGUCGGCgCGAGGCCuuGUuuggucccuGUAGCUCu -3'
miRNA:   3'- -CGG--UAGCCG-GCUUCGG--CGu--------CGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.