miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 44664 0.66 0.731713
Target:  5'- uGCCGUUGGuucccCCGuGGCCGCAGUA-UUCc -3'
miRNA:   3'- -CGGUAGCC-----GGCuUCGGCGUCGUcGAG- -5'
24704 5' -59.5 NC_005264.1 + 44784 0.67 0.722025
Target:  5'- gGCgAUCGuuGCCGAcGCCGCGGUcGC-Cg -3'
miRNA:   3'- -CGgUAGC--CGGCUuCGGCGUCGuCGaG- -5'
24704 5' -59.5 NC_005264.1 + 45906 0.74 0.312172
Target:  5'- gGCCAUCGa-CGGAGCCG-AGCAGCUa -3'
miRNA:   3'- -CGGUAGCcgGCUUCGGCgUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 46268 0.7 0.504248
Target:  5'- uGCCAUgaacuuGCUGAGcGCCGCAGCucGCUCa -3'
miRNA:   3'- -CGGUAgc----CGGCUU-CGGCGUCGu-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 48091 0.66 0.769545
Target:  5'- aCUcgCGGCCGcgcggguucuGCaCGCGcGCGGCUCa -3'
miRNA:   3'- cGGuaGCCGGCuu--------CG-GCGU-CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 49804 0.73 0.348851
Target:  5'- cGCCG-CGGCCcagucgcGGCCGCGGaaaAGCUCa -3'
miRNA:   3'- -CGGUaGCCGGcu-----UCGGCGUCg--UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 50310 0.69 0.56252
Target:  5'- gGCgGUuaCGGCCuGGAGCCGCGaguacGCGGCgUCg -3'
miRNA:   3'- -CGgUA--GCCGG-CUUCGGCGU-----CGUCG-AG- -5'
24704 5' -59.5 NC_005264.1 + 50494 0.66 0.760242
Target:  5'- -aCGU-GGCCacGGCCGCGGcCAGUUCu -3'
miRNA:   3'- cgGUAgCCGGcuUCGGCGUC-GUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 51095 0.67 0.702434
Target:  5'- cGCgGUC-GCCGguGCUGCGGUcuGCUCg -3'
miRNA:   3'- -CGgUAGcCGGCuuCGGCGUCGu-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 52673 0.71 0.466881
Target:  5'- uGCCAggauaGGCCccaAAGCCGCGGCGGgUUu -3'
miRNA:   3'- -CGGUag---CCGGc--UUCGGCGUCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 53050 0.66 0.750831
Target:  5'- gGCCc-CGGCCGAGuCUGCgucGGCAGCa- -3'
miRNA:   3'- -CGGuaGCCGGCUUcGGCG---UCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 53128 0.74 0.326483
Target:  5'- gGCCGaggaGGCCGGGcaaucuGCCGCGGCAaaGCUCa -3'
miRNA:   3'- -CGGUag--CCGGCUU------CGGCGUCGU--CGAG- -5'
24704 5' -59.5 NC_005264.1 + 55940 0.67 0.711282
Target:  5'- aGCCGcggcaguaguuucUCGGCUuAAGCCGCuGC-GUUCg -3'
miRNA:   3'- -CGGU-------------AGCCGGcUUCGGCGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 60615 0.66 0.778729
Target:  5'- uGCCG-CGGCagccGGCUcgcgcaggaGCAGCAGCUUg -3'
miRNA:   3'- -CGGUaGCCGgcu-UCGG---------CGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 62931 0.66 0.750831
Target:  5'- gGCUugcgCGGCCGcAAGCCGC-GCcuuuuGUUCg -3'
miRNA:   3'- -CGGua--GCCGGC-UUCGGCGuCGu----CGAG- -5'
24704 5' -59.5 NC_005264.1 + 64409 0.7 0.542851
Target:  5'- gGCCAa-GGCCGAcGCCGCGGgcaCGGCg- -3'
miRNA:   3'- -CGGUagCCGGCUuCGGCGUC---GUCGag -5'
24704 5' -59.5 NC_005264.1 + 65246 0.75 0.284991
Target:  5'- cGCCG-CGGCCGAGGaaGCGGUacgguucuAGCUCu -3'
miRNA:   3'- -CGGUaGCCGGCUUCggCGUCG--------UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 65319 0.75 0.278495
Target:  5'- uGCCA-C-GCCacAGCCGCGGCAGCUCc -3'
miRNA:   3'- -CGGUaGcCGGcuUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 66375 0.66 0.778729
Target:  5'- cGUUggUGGCCGAcucgcuggaAGCCGCua-GGCUCa -3'
miRNA:   3'- -CGGuaGCCGGCU---------UCGGCGucgUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 66474 0.67 0.719104
Target:  5'- cGCCG-CGGCCaGAcucaaugcuuggcgGGCugCGCGGCGcGCUCg -3'
miRNA:   3'- -CGGUaGCCGG-CU--------------UCG--GCGUCGU-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.