miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 66611 0.66 0.769545
Target:  5'- cGCCG-CGuuGCCGgcGCCGUcGCGGCcCg -3'
miRNA:   3'- -CGGUaGC--CGGCuuCGGCGuCGUCGaG- -5'
24704 5' -59.5 NC_005264.1 + 67289 0.7 0.5331
Target:  5'- aGCgCGUCGGCuuCGAAGgguaUCGCGGCGGCg- -3'
miRNA:   3'- -CG-GUAGCCG--GCUUC----GGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 69041 0.7 0.5331
Target:  5'- aGUCGaucucuUUGGCCGcGGCCGCcgGGCAGgUCa -3'
miRNA:   3'- -CGGU------AGCCGGCuUCGGCG--UCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 69770 0.73 0.341275
Target:  5'- uGCCAcgaauUCgGGCgGAGGCCGCAugGCAGCg- -3'
miRNA:   3'- -CGGU-----AG-CCGgCUUCGGCGU--CGUCGag -5'
24704 5' -59.5 NC_005264.1 + 69775 0.66 0.750831
Target:  5'- cGCCG-CGGCCccucCCGCAGCAGaCa- -3'
miRNA:   3'- -CGGUaGCCGGcuucGGCGUCGUC-Gag -5'
24704 5' -59.5 NC_005264.1 + 69850 0.69 0.552659
Target:  5'- cGCUA-CGGCCGguGCUGCGGC-GCg- -3'
miRNA:   3'- -CGGUaGCCGGCuuCGGCGUCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 71348 0.7 0.504248
Target:  5'- cGCC----GCCGAAaccCCGCAGCGGCUCu -3'
miRNA:   3'- -CGGuagcCGGCUUc--GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 71811 0.71 0.485394
Target:  5'- cGCauagCGGCCGAAGCCGCccGCGGg-- -3'
miRNA:   3'- -CGgua-GCCGGCUUCGGCGu-CGUCgag -5'
24704 5' -59.5 NC_005264.1 + 73884 0.67 0.712262
Target:  5'- cGCCGUC-GCCGAcuCuCGCAGCAgGCg- -3'
miRNA:   3'- -CGGUAGcCGGCUucG-GCGUCGU-CGag -5'
24704 5' -59.5 NC_005264.1 + 75296 0.67 0.722025
Target:  5'- uCCGaugCGGaCGAcuccucggaGGCCGCgGGCGGCUCa -3'
miRNA:   3'- cGGUa--GCCgGCU---------UCGGCG-UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 76026 0.69 0.572428
Target:  5'- --aGUCGGCCGAcgacAGCgGCAGCGGa-- -3'
miRNA:   3'- cggUAGCCGGCU----UCGgCGUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 76649 0.68 0.662634
Target:  5'- aCCAUCgaGGCCGAugcGGCCaccGguGCGGCa- -3'
miRNA:   3'- cGGUAG--CCGGCU---UCGG---CguCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 77202 0.69 0.59236
Target:  5'- gGCCAUcgCGGCCauuAGCgGCuGCAGCa- -3'
miRNA:   3'- -CGGUA--GCCGGcu-UCGgCGuCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 77654 0.7 0.523413
Target:  5'- --uGUCGaaGCgGGAGCCGUAGCAGCa- -3'
miRNA:   3'- cggUAGC--CGgCUUCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 79399 0.69 0.572428
Target:  5'- cGCCGcgggCGuGgCGAGGCCGCGGCGGa-- -3'
miRNA:   3'- -CGGUa---GC-CgGCUUCGGCGUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 79567 0.7 0.523413
Target:  5'- gGCCuugCGGCCGAAauugaaguucGCCGCGcCAGCg- -3'
miRNA:   3'- -CGGua-GCCGGCUU----------CGGCGUcGUCGag -5'
24704 5' -59.5 NC_005264.1 + 79913 0.66 0.760242
Target:  5'- uGCgCGU-GGCCGAcGuCUGCGGCGGaCUCc -3'
miRNA:   3'- -CG-GUAgCCGGCUuC-GGCGUCGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 80664 0.69 0.552659
Target:  5'- gGCCG-CcGCCGAccGGCCGCacGGCAGUUUg -3'
miRNA:   3'- -CGGUaGcCGGCU--UCGGCG--UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 81011 0.69 0.602371
Target:  5'- cGCCuuggUGGUCGAAGCCaGCGGCGcCUa -3'
miRNA:   3'- -CGGua--GCCGGCUUCGG-CGUCGUcGAg -5'
24704 5' -59.5 NC_005264.1 + 81228 0.74 0.333819
Target:  5'- -gCAUCGGCCGucccuGgCGCAGCGGCa- -3'
miRNA:   3'- cgGUAGCCGGCuu---CgGCGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.