miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 133477 0.67 0.701448
Target:  5'- aGCuCAUCGGaCGAAGCCGgcguaccCGGCAGacgUCg -3'
miRNA:   3'- -CG-GUAGCCgGCUUCGGC-------GUCGUCg--AG- -5'
24704 5' -59.5 NC_005264.1 + 132489 0.68 0.662634
Target:  5'- aGCCAcgUGGCCGcagggcAGCUGCugacuaucaAGCAGCUUc -3'
miRNA:   3'- -CGGUa-GCCGGCu-----UCGGCG---------UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 132385 0.67 0.702434
Target:  5'- -aCGUCggGGCCG-AGCCGgGGCccgcGGCUCc -3'
miRNA:   3'- cgGUAG--CCGGCuUCGGCgUCG----UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 129224 0.7 0.523413
Target:  5'- cGCCaAUCuGGCCGAacuuuAGCgGCGGCAaGcCUCg -3'
miRNA:   3'- -CGG-UAG-CCGGCU-----UCGgCGUCGU-C-GAG- -5'
24704 5' -59.5 NC_005264.1 + 129035 0.69 0.602371
Target:  5'- uGCCggCGaGCCGGuccaaAGCgGCGugcGCGGCUCg -3'
miRNA:   3'- -CGGuaGC-CGGCU-----UCGgCGU---CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 128750 0.67 0.67264
Target:  5'- aGCCAUUGuGCCc--GCCGCGGCAaacugcggGCUUc -3'
miRNA:   3'- -CGGUAGC-CGGcuuCGGCGUCGU--------CGAG- -5'
24704 5' -59.5 NC_005264.1 + 128655 0.68 0.612404
Target:  5'- uGCCG-CGGCUGcuGUC-CAGCAGCUg -3'
miRNA:   3'- -CGGUaGCCGGCuuCGGcGUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 128044 0.7 0.532129
Target:  5'- cGCUAcCGcGUCGAuGGCCGCccgcaugAGCGGCUCa -3'
miRNA:   3'- -CGGUaGC-CGGCU-UCGGCG-------UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 127357 0.69 0.572428
Target:  5'- aGCCGUCG--CGAucGGCCGCGGCA-CUCu -3'
miRNA:   3'- -CGGUAGCcgGCU--UCGGCGUCGUcGAG- -5'
24704 5' -59.5 NC_005264.1 + 127252 1.1 0.00117
Target:  5'- gGCCAUCGGCCGAAGCCGCAGCAGCUCc -3'
miRNA:   3'- -CGGUAGCCGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 126163 0.68 0.642558
Target:  5'- cGCCAUUGcGCCaGAguauggcgcAGCCGCAGguuGGCUUa -3'
miRNA:   3'- -CGGUAGC-CGG-CU---------UCGGCGUCg--UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 126011 0.73 0.364359
Target:  5'- cGCUGUCGGUcuccuccucggCGuGGcCCGCGGCGGCUCc -3'
miRNA:   3'- -CGGUAGCCG-----------GCuUC-GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 124300 0.69 0.572428
Target:  5'- aGUCG-CGGCCGGacGGCgggGCGGCGGCUg -3'
miRNA:   3'- -CGGUaGCCGGCU--UCGg--CGUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 123716 0.68 0.632504
Target:  5'- gGCCGgagaGGCCGAAGC-GCAGCAa--- -3'
miRNA:   3'- -CGGUag--CCGGCUUCGgCGUCGUcgag -5'
24704 5' -59.5 NC_005264.1 + 123367 0.68 0.612404
Target:  5'- uGCCccuggCGGCUGAGcgcgcGUCGCAGCAuGCUUu -3'
miRNA:   3'- -CGGua---GCCGGCUU-----CGGCGUCGU-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 122851 0.68 0.626472
Target:  5'- gGCC--CGGgCGggGCCGCAggaggaaauacgaccGCAGaCUCg -3'
miRNA:   3'- -CGGuaGCCgGCuuCGGCGU---------------CGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 122285 0.66 0.750831
Target:  5'- uGCUGUCGcuCCaGGAGCCGCAGC-GC-Ca -3'
miRNA:   3'- -CGGUAGCc-GG-CUUCGGCGUCGuCGaG- -5'
24704 5' -59.5 NC_005264.1 + 121868 0.67 0.701448
Target:  5'- gGCCGgucgcgcUCGcGCCGucGcCCGCuGCGGCUg -3'
miRNA:   3'- -CGGU-------AGC-CGGCuuC-GGCGuCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 116403 0.66 0.741318
Target:  5'- aGCCGcaGGCCGAcgucgagcgcagGGCgGCGuGCAGcCUCg -3'
miRNA:   3'- -CGGUagCCGGCU------------UCGgCGU-CGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 116399 0.7 0.5331
Target:  5'- uUCGUCGGCUcucgcuGAGcCCGCGGCAGgUCg -3'
miRNA:   3'- cGGUAGCCGGc-----UUC-GGCGUCGUCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.