miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 112502 0.68 0.642558
Target:  5'- uGCCGcaggacaaGGUCGAcGCCGCGuacucGCGGCUCc -3'
miRNA:   3'- -CGGUag------CCGGCUuCGGCGU-----CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 109789 0.67 0.681618
Target:  5'- uGCCGacgcagacUCGGCCGggGCCauuuccaugacguGCGuGCAGgUUg -3'
miRNA:   3'- -CGGU--------AGCCGGCuuCGG-------------CGU-CGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 106869 0.66 0.750831
Target:  5'- gGUCAUgGGCgGGcacgaaCGCAGCGGCUUa -3'
miRNA:   3'- -CGGUAgCCGgCUucg---GCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 106010 0.66 0.759306
Target:  5'- aGCCA-CGaGCCGcuagcuaGGGCCGCcgcGCAGCg- -3'
miRNA:   3'- -CGGUaGC-CGGC-------UUCGGCGu--CGUCGag -5'
24704 5' -59.5 NC_005264.1 + 104833 0.67 0.722025
Target:  5'- gGCCuGUCcGCCGggGCCGCugAGCcacGGC-Cg -3'
miRNA:   3'- -CGG-UAGcCGGCuuCGGCG--UCG---UCGaG- -5'
24704 5' -59.5 NC_005264.1 + 104712 0.66 0.760242
Target:  5'- aCCAgaCGGCugcgCGAGGUcgCGCAGCAGCg- -3'
miRNA:   3'- cGGUa-GCCG----GCUUCG--GCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 104553 0.68 0.612404
Target:  5'- cGCCAUCagaGGaaGAAGCUcuguccaagGCAGCgGGCUCg -3'
miRNA:   3'- -CGGUAG---CCggCUUCGG---------CGUCG-UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 104295 0.66 0.750831
Target:  5'- cGCgGUCGGCCGGAGgaGguGCAa--- -3'
miRNA:   3'- -CGgUAGCCGGCUUCggCguCGUcgag -5'
24704 5' -59.5 NC_005264.1 + 103710 0.67 0.722025
Target:  5'- gGCCAguggagcggCGGCgCGGcaucAGCgGCGGCGGC-Cg -3'
miRNA:   3'- -CGGUa--------GCCG-GCU----UCGgCGUCGUCGaG- -5'
24704 5' -59.5 NC_005264.1 + 102846 0.66 0.750831
Target:  5'- gGCCAcgCGGCCGucucGCuCGCGGCcaccgccgcguGGCUg -3'
miRNA:   3'- -CGGUa-GCCGGCuu--CG-GCGUCG-----------UCGAg -5'
24704 5' -59.5 NC_005264.1 + 102115 0.67 0.692548
Target:  5'- gGCUggCGGCgguaCGAGGCCGCGGCcaacaaccuGCUg -3'
miRNA:   3'- -CGGuaGCCG----GCUUCGGCGUCGu--------CGAg -5'
24704 5' -59.5 NC_005264.1 + 101830 0.71 0.476093
Target:  5'- cGCC--UGGCCGAAGCCGaGGCAGa-- -3'
miRNA:   3'- -CGGuaGCCGGCUUCGGCgUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 99854 0.68 0.662634
Target:  5'- cGCCuuggaGUCcGCCaAAGCCGCGGUGGCg- -3'
miRNA:   3'- -CGG-----UAGcCGGcUUCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 97600 0.68 0.652604
Target:  5'- cGCUuccUCGGCCGcGGCgGCuaCGGCUCa -3'
miRNA:   3'- -CGGu--AGCCGGCuUCGgCGucGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 97525 0.66 0.750831
Target:  5'- uGCCG-CGGCUGuGG-CGUGGCAGCg- -3'
miRNA:   3'- -CGGUaGCCGGCuUCgGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 94517 0.72 0.422279
Target:  5'- aGCCGUCGGCCacgugGGAGg-GCAGCGGCg- -3'
miRNA:   3'- -CGGUAGCCGG-----CUUCggCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 93068 0.68 0.629488
Target:  5'- uGCUG-CGGgaGggGCCGCGGCgaccucggcuucucAGCUCg -3'
miRNA:   3'- -CGGUaGCCggCuuCGGCGUCG--------------UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 92992 0.66 0.778729
Target:  5'- cGCCGcagcacgCGGCCGuAGCgGgGGCAGUc- -3'
miRNA:   3'- -CGGUa------GCCGGCuUCGgCgUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 92715 0.7 0.504248
Target:  5'- uGCCGcacGCgGGAGUaCGCGGCAGCUCg -3'
miRNA:   3'- -CGGUagcCGgCUUCG-GCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 91873 0.69 0.576403
Target:  5'- -aCAaUGGUCGAgguagcggggugguuGGCCGCGGCAGCg- -3'
miRNA:   3'- cgGUaGCCGGCU---------------UCGGCGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.