miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 90928 0.68 0.652604
Target:  5'- cGCCAUUauguuGCCGGAGuuGaAGCGGCUa -3'
miRNA:   3'- -CGGUAGc----CGGCUUCggCgUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 116399 0.7 0.5331
Target:  5'- uUCGUCGGCUcucgcuGAGcCCGCGGCAGgUCg -3'
miRNA:   3'- cGGUAGCCGGc-----UUC-GGCGUCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 65319 0.75 0.278495
Target:  5'- uGCCA-C-GCCacAGCCGCGGCAGCUCc -3'
miRNA:   3'- -CGGUaGcCGGcuUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 112502 0.68 0.642558
Target:  5'- uGCCGcaggacaaGGUCGAcGCCGCGuacucGCGGCUCc -3'
miRNA:   3'- -CGGUag------CCGGCUuCGGCGU-----CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 17676 0.87 0.047036
Target:  5'- aGCCucaggCGcaGCCGAGGCCGCGGCGGCUCg -3'
miRNA:   3'- -CGGua---GC--CGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 104295 0.66 0.750831
Target:  5'- cGCgGUCGGCCGGAGgaGguGCAa--- -3'
miRNA:   3'- -CGgUAGCCGGCUUCggCguCGUcgag -5'
24704 5' -59.5 NC_005264.1 + 69770 0.73 0.341275
Target:  5'- uGCCAcgaauUCgGGCgGAGGCCGCAugGCAGCg- -3'
miRNA:   3'- -CGGU-----AG-CCGgCUUCGGCGU--CGUCGag -5'
24704 5' -59.5 NC_005264.1 + 21364 0.66 0.750831
Target:  5'- gGCCGccUCGGCCGGuggaaagaGGCC-CcGCcGCUCg -3'
miRNA:   3'- -CGGU--AGCCGGCU--------UCGGcGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 149452 0.66 0.747987
Target:  5'- aGCUG-CGGCgGAggaggucucgggggAGCCGCGGgcccCGGCUCg -3'
miRNA:   3'- -CGGUaGCCGgCU--------------UCGGCGUC----GUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 86314 0.67 0.722025
Target:  5'- uGCCAgauaCcGCCGAAGCgGCGGUAGacggUCg -3'
miRNA:   3'- -CGGUa---GcCGGCUUCGgCGUCGUCg---AG- -5'
24704 5' -59.5 NC_005264.1 + 132385 0.67 0.702434
Target:  5'- -aCGUCggGGCCG-AGCCGgGGCccgcGGCUCc -3'
miRNA:   3'- cgGUAG--CCGGCuUCGGCgUCG----UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 5513 0.67 0.67264
Target:  5'- uUUGUUGGCCuGAugacAGCCGCGGCGuCUCg -3'
miRNA:   3'- cGGUAGCCGG-CU----UCGGCGUCGUcGAG- -5'
24704 5' -59.5 NC_005264.1 + 97600 0.68 0.652604
Target:  5'- cGCUuccUCGGCCGcGGCgGCuaCGGCUCa -3'
miRNA:   3'- -CGGu--AGCCGGCuUCGgCGucGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 123367 0.68 0.612404
Target:  5'- uGCCccuggCGGCUGAGcgcgcGUCGCAGCAuGCUUu -3'
miRNA:   3'- -CGGua---GCCGGCUU-----CGGCGUCGU-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 91873 0.69 0.576403
Target:  5'- -aCAaUGGUCGAgguagcggggugguuGGCCGCGGCAGCg- -3'
miRNA:   3'- cgGUaGCCGGCU---------------UCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 83439 0.69 0.552659
Target:  5'- cGCCG-CGGCCucgccacGcCCGCGGCGGUUCu -3'
miRNA:   3'- -CGGUaGCCGGcuu----C-GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 64409 0.7 0.542851
Target:  5'- gGCCAa-GGCCGAcGCCGCGGgcaCGGCg- -3'
miRNA:   3'- -CGGUagCCGGCUuCGGCGUC---GUCGag -5'
24704 5' -59.5 NC_005264.1 + 71348 0.7 0.504248
Target:  5'- cGCC----GCCGAAaccCCGCAGCGGCUCu -3'
miRNA:   3'- -CGGuagcCGGCUUc--GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 16910 0.71 0.485394
Target:  5'- cCCGUCGGCCGcggacgauGGCgGCGGC-GUUCu -3'
miRNA:   3'- cGGUAGCCGGCu-------UCGgCGUCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 2990 0.72 0.422279
Target:  5'- uCCAUCGagcGCCGAcugGGCCgGCGGCucGGCUCu -3'
miRNA:   3'- cGGUAGC---CGGCU---UCGG-CGUCG--UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.