miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 147243 0.71 0.466881
Target:  5'- --gAUauGCCGGAGCCGCAGCuGCg- -3'
miRNA:   3'- cggUAgcCGGCUUCGGCGUCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 71811 0.71 0.485394
Target:  5'- cGCauagCGGCCGAAGCCGCccGCGGg-- -3'
miRNA:   3'- -CGgua-GCCGGCUUCGGCGu-CGUCgag -5'
24704 5' -59.5 NC_005264.1 + 79567 0.7 0.523413
Target:  5'- gGCCuugCGGCCGAAauugaaguucGCCGCGcCAGCg- -3'
miRNA:   3'- -CGGua-GCCGGCUU----------CGGCGUcGUCGag -5'
24704 5' -59.5 NC_005264.1 + 64409 0.7 0.542851
Target:  5'- gGCCAa-GGCCGAcGCCGCGGgcaCGGCg- -3'
miRNA:   3'- -CGGUagCCGGCUuCGGCGUC---GUCGag -5'
24704 5' -59.5 NC_005264.1 + 150818 0.69 0.56252
Target:  5'- cGCCuaagggCGGCgGucGCCGCcGCAGgUCg -3'
miRNA:   3'- -CGGua----GCCGgCuuCGGCGuCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 21364 0.66 0.750831
Target:  5'- gGCCGccUCGGCCGGuggaaagaGGCC-CcGCcGCUCg -3'
miRNA:   3'- -CGGU--AGCCGGCU--------UCGGcGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 35485 0.66 0.731713
Target:  5'- uGCCG-CGGCCGA--UCGCGaCGGCUUg -3'
miRNA:   3'- -CGGUaGCCGGCUucGGCGUcGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 75296 0.67 0.722025
Target:  5'- uCCGaugCGGaCGAcuccucggaGGCCGCgGGCGGCUCa -3'
miRNA:   3'- cGGUa--GCCgGCU---------UCGGCG-UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 121868 0.67 0.701448
Target:  5'- gGCCGgucgcgcUCGcGCCGucGcCCGCuGCGGCUg -3'
miRNA:   3'- -CGGU-------AGC-CGGCuuC-GGCGuCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 50310 0.69 0.56252
Target:  5'- gGCgGUuaCGGCCuGGAGCCGCGaguacGCGGCgUCg -3'
miRNA:   3'- -CGgUA--GCCGG-CUUCGGCGU-----CGUCG-AG- -5'
24704 5' -59.5 NC_005264.1 + 69850 0.69 0.552659
Target:  5'- cGCUA-CGGCCGguGCUGCGGC-GCg- -3'
miRNA:   3'- -CGGUaGCCGGCuuCGGCGUCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 69041 0.7 0.5331
Target:  5'- aGUCGaucucuUUGGCCGcGGCCGCcgGGCAGgUCa -3'
miRNA:   3'- -CGGU------AGCCGGCuUCGGCG--UCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 129224 0.7 0.523413
Target:  5'- cGCCaAUCuGGCCGAacuuuAGCgGCGGCAaGcCUCg -3'
miRNA:   3'- -CGG-UAG-CCGGCU-----UCGgCGUCGU-C-GAG- -5'
24704 5' -59.5 NC_005264.1 + 116403 0.66 0.741318
Target:  5'- aGCCGcaGGCCGAcgucgagcgcagGGCgGCGuGCAGcCUCg -3'
miRNA:   3'- -CGGUagCCGGCU------------UCGgCGU-CGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 9724 0.67 0.67264
Target:  5'- aGCCAUUGuGCCc--GCCGCGGCAaacugcggGCUUc -3'
miRNA:   3'- -CGGUAGC-CGGcuuCGGCGUCGU--------CGAG- -5'
24704 5' -59.5 NC_005264.1 + 109789 0.67 0.681618
Target:  5'- uGCCGacgcagacUCGGCCGggGCCauuuccaugacguGCGuGCAGgUUg -3'
miRNA:   3'- -CGGU--------AGCCGGCuuCGG-------------CGU-CGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 82175 0.7 0.504248
Target:  5'- uGCCGUgCGGCCGGu-CgGCGGCGGCcaUCg -3'
miRNA:   3'- -CGGUA-GCCGGCUucGgCGUCGUCG--AG- -5'
24704 5' -59.5 NC_005264.1 + 101830 0.71 0.476093
Target:  5'- cGCC--UGGCCGAAGCCGaGGCAGa-- -3'
miRNA:   3'- -CGGuaGCCGGCUUCGGCgUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 128044 0.7 0.532129
Target:  5'- cGCUAcCGcGUCGAuGGCCGCccgcaugAGCGGCUCa -3'
miRNA:   3'- -CGGUaGC-CGGCU-UCGGCG-------UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 99854 0.68 0.662634
Target:  5'- cGCCuuggaGUCcGCCaAAGCCGCGGUGGCg- -3'
miRNA:   3'- -CGG-----UAGcCGGcUUCGGCGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.