Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24704 | 5' | -59.5 | NC_005264.1 | + | 155235 | 0.66 | 0.766766 |
Target: 5'- uGCUG-CGGCgGggGaugaggaagcaucuCCGCAGCGGCg- -3' miRNA: 3'- -CGGUaGCCGgCuuC--------------GGCGUCGUCGag -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 133954 | 0.66 | 0.769545 |
Target: 5'- aGCU--UGGCCGggGUcuuCGCGGUGGCg- -3' miRNA: 3'- -CGGuaGCCGGCuuCG---GCGUCGUCGag -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 32148 | 0.66 | 0.769545 |
Target: 5'- cCCAUUGGCCuaGAGGCCGCuuaAGUa- -3' miRNA: 3'- cGGUAGCCGG--CUUCGGCGucgUCGag -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 48091 | 0.66 | 0.769545 |
Target: 5'- aCUcgCGGCCGcgcggguucuGCaCGCGcGCGGCUCa -3' miRNA: 3'- cGGuaGCCGGCuu--------CG-GCGU-CGUCGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 35596 | 0.66 | 0.777816 |
Target: 5'- gGCU-UCGGCCGAuGGCCGCGucuccguguccccGgGGUUCu -3' miRNA: 3'- -CGGuAGCCGGCU-UCGGCGU-------------CgUCGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 116403 | 0.66 | 0.741318 |
Target: 5'- aGCCGcaGGCCGAcgucgagcgcagGGCgGCGuGCAGcCUCg -3' miRNA: 3'- -CGGUagCCGGCU------------UCGgCGU-CGUC-GAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 104833 | 0.67 | 0.722025 |
Target: 5'- gGCCuGUCcGCCGggGCCGCugAGCcacGGC-Cg -3' miRNA: 3'- -CGG-UAGcCGGCuuCGGCG--UCG---UCGaG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 109789 | 0.67 | 0.681618 |
Target: 5'- uGCCGacgcagacUCGGCCGggGCCauuuccaugacguGCGuGCAGgUUg -3' miRNA: 3'- -CGGU--------AGCCGGCuuCGG-------------CGU-CGUCgAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 16463 | 0.67 | 0.682614 |
Target: 5'- gGUCAUCGuuCCGAcgacgcAGCCGCGGUGGCc- -3' miRNA: 3'- -CGGUAGCc-GGCU------UCGGCGUCGUCGag -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 140896 | 0.67 | 0.692548 |
Target: 5'- gGCCuuuugCGGCCcGAGUCGCcgacCAGCUCc -3' miRNA: 3'- -CGGua---GCCGGcUUCGGCGuc--GUCGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 25133 | 0.67 | 0.692548 |
Target: 5'- cGCCGugucUCGGCCGAguaguuGGCCGUgAGCgAGgaCg -3' miRNA: 3'- -CGGU----AGCCGGCU------UCGGCG-UCG-UCgaG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 102115 | 0.67 | 0.692548 |
Target: 5'- gGCUggCGGCgguaCGAGGCCGCGGCcaacaaccuGCUg -3' miRNA: 3'- -CGGuaGCCG----GCUUCGGCGUCGu--------CGAg -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 2842 | 0.67 | 0.701448 |
Target: 5'- gGCCGgucgcgcUCGcGCCGucGcCCGCuGCGGCUg -3' miRNA: 3'- -CGGU-------AGC-CGGCuuC-GGCGuCGUCGAg -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 13358 | 0.67 | 0.702434 |
Target: 5'- -aCGUCggGGCCG-AGCCGgGGCccgcGGCUCc -3' miRNA: 3'- cgGUAG--CCGGCuUCGGCgUCG----UCGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 55940 | 0.67 | 0.711282 |
Target: 5'- aGCCGcggcaguaguuucUCGGCUuAAGCCGCuGC-GUUCg -3' miRNA: 3'- -CGGU-------------AGCCGGcUUCGGCGuCGuCGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 30902 | 0.67 | 0.712262 |
Target: 5'- -gCGUCGGgggaggacugCGAGGCCG-GGCGGCUCg -3' miRNA: 3'- cgGUAGCCg---------GCUUCGGCgUCGUCGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 73884 | 0.67 | 0.712262 |
Target: 5'- cGCCGUC-GCCGAcuCuCGCAGCAgGCg- -3' miRNA: 3'- -CGGUAGcCGGCUucG-GCGUCGU-CGag -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 66474 | 0.67 | 0.719104 |
Target: 5'- cGCCG-CGGCCaGAcucaaugcuuggcgGGCugCGCGGCGcGCUCg -3' miRNA: 3'- -CGGUaGCCGG-CU--------------UCG--GCGUCGU-CGAG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 44784 | 0.67 | 0.722025 |
Target: 5'- gGCgAUCGuuGCCGAcGCCGCGGUcGC-Cg -3' miRNA: 3'- -CGgUAGC--CGGCUuCGGCGUCGuCGaG- -5' |
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24704 | 5' | -59.5 | NC_005264.1 | + | 103710 | 0.67 | 0.722025 |
Target: 5'- gGCCAguggagcggCGGCgCGGcaucAGCgGCGGCGGC-Cg -3' miRNA: 3'- -CGGUa--------GCCG-GCU----UCGgCGUCGUCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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