Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24706 | 3' | -54.9 | NC_005264.1 | + | 147568 | 0.69 | 0.826469 |
Target: 5'- gGCCGC-CGACGUGUgcGACGgGGAa- -3' miRNA: 3'- -UGGUGaGCUGCGCGuaCUGUgCCUac -5' |
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24706 | 3' | -54.9 | NC_005264.1 | + | 149408 | 0.68 | 0.894609 |
Target: 5'- uCCGCUCG-CGCGUA-GACugGGccuuUGg -3' miRNA: 3'- uGGUGAGCuGCGCGUaCUGugCCu---AC- -5' |
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24706 | 3' | -54.9 | NC_005264.1 | + | 155372 | 0.68 | 0.887893 |
Target: 5'- gGCCGCaCGACGUucuCcgGACGCGGAg- -3' miRNA: 3'- -UGGUGaGCUGCGc--GuaCUGUGCCUac -5' |
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24706 | 3' | -54.9 | NC_005264.1 | + | 159394 | 0.66 | 0.944465 |
Target: 5'- gACC-CUCGugGCGCuuUGcgagcaGCGCGGGc- -3' miRNA: 3'- -UGGuGAGCugCGCGu-AC------UGUGCCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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