Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24706 | 3' | -54.9 | NC_005264.1 | + | 94593 | 0.68 | 0.866408 |
Target: 5'- gGCCGCccgCGGCGCggGCAUGGCuuGGcgGu -3' miRNA: 3'- -UGGUGa--GCUGCG--CGUACUGugCCuaC- -5' |
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24706 | 3' | -54.9 | NC_005264.1 | + | 62046 | 0.68 | 0.878112 |
Target: 5'- uACCAUcguaagagauuugCGGCGCGCAUGGCuuGGGc- -3' miRNA: 3'- -UGGUGa------------GCUGCGCGUACUGugCCUac -5' |
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24706 | 3' | -54.9 | NC_005264.1 | + | 58890 | 0.68 | 0.880951 |
Target: 5'- cGCCACgCGuuCGCGCAUa--GCGGAUGc -3' miRNA: 3'- -UGGUGaGCu-GCGCGUAcugUGCCUAC- -5' |
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24706 | 3' | -54.9 | NC_005264.1 | + | 131590 | 0.66 | 0.954128 |
Target: 5'- cGCCuagguguggagggagCGGCGCGCGUGggcgcGCGCGGAg- -3' miRNA: 3'- -UGGuga------------GCUGCGCGUAC-----UGUGCCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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