Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24706 | 5' | -55.7 | NC_005264.1 | + | 114966 | 0.66 | 0.926456 |
Target: 5'- ---uCCCGC-AGCCUAGCGcgaacUUGAGGc -3' miRNA: 3'- gaguGGGUGcUCGGAUCGC-----AACUCCu -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 119862 | 0.66 | 0.924303 |
Target: 5'- --uGCCUcgACGAGCUUAGCGUcacugccaaccagGGGGAc -3' miRNA: 3'- gagUGGG--UGCUCGGAUCGCAa------------CUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 154557 | 0.66 | 0.915308 |
Target: 5'- gUCGCCCACGGGCgccuugUUGGCGUuccUGAa-- -3' miRNA: 3'- gAGUGGGUGCUCG------GAUCGCA---ACUccu -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 35530 | 0.66 | 0.915308 |
Target: 5'- gUCGCCCACGGGCgccuugUUGGCGUuccUGAa-- -3' miRNA: 3'- gAGUGGGUGCUCG------GAUCGCA---ACUccu -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 122663 | 0.66 | 0.909377 |
Target: 5'- -aCACCUACuuuGGCCUGGCGacaGGGAa -3' miRNA: 3'- gaGUGGGUGc--UCGGAUCGCaacUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 120043 | 0.66 | 0.90321 |
Target: 5'- --aGCUCAgGgGGUCUAGCGggGGGGAa -3' miRNA: 3'- gagUGGGUgC-UCGGAUCGCaaCUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 43139 | 0.66 | 0.90321 |
Target: 5'- -aCACCuaagCACGGGUggAGCGggGAGGGg -3' miRNA: 3'- gaGUGG----GUGCUCGgaUCGCaaCUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 162166 | 0.66 | 0.90321 |
Target: 5'- -aCACCuaagCACGGGUggAGCGggGAGGGg -3' miRNA: 3'- gaGUGG----GUGCUCGgaUCGCaaCUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 144904 | 0.66 | 0.90321 |
Target: 5'- -aCugUCGCGAGCCUggucuuucuaAGCGUgauucuagGGGGGc -3' miRNA: 3'- gaGugGGUGCUCGGA----------UCGCAa-------CUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 29220 | 0.67 | 0.883325 |
Target: 5'- gUCACCgAUgggGAGCC-AGCGgucGAGGAg -3' miRNA: 3'- gAGUGGgUG---CUCGGaUCGCaa-CUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 152504 | 0.67 | 0.876247 |
Target: 5'- -aUAUCCACGAGCCaguGaCGUaGAGGGc -3' miRNA: 3'- gaGUGGGUGCUCGGau-C-GCAaCUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 4736 | 0.68 | 0.861442 |
Target: 5'- --uGCCCGcCGAGCC-GGCGUccGGGGGu -3' miRNA: 3'- gagUGGGU-GCUCGGaUCGCAa-CUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 123762 | 0.68 | 0.861442 |
Target: 5'- --uGCCCGcCGAGCC-GGCGUccGGGGGu -3' miRNA: 3'- gagUGGGU-GCUCGGaUCGCAa-CUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 51779 | 0.68 | 0.853726 |
Target: 5'- aUCGCCCggcGCGAaCUUGGCGUUGAugucguagGGAa -3' miRNA: 3'- gAGUGGG---UGCUcGGAUCGCAACU--------CCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 5872 | 0.68 | 0.837701 |
Target: 5'- -cCGCgCCGCGAGCgUGGUccaguaGUUGAGGu -3' miRNA: 3'- gaGUG-GGUGCUCGgAUCG------CAACUCCu -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 30407 | 0.69 | 0.79451 |
Target: 5'- -aCGCCgGCGAGCgUAGCGUUGu--- -3' miRNA: 3'- gaGUGGgUGCUCGgAUCGCAACuccu -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 4011 | 0.69 | 0.785399 |
Target: 5'- cCUCGCCCACcagGGGCUUGGCGggccgaUGcaucAGGAg -3' miRNA: 3'- -GAGUGGGUG---CUCGGAUCGCa-----AC----UCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 149563 | 0.69 | 0.785399 |
Target: 5'- aCUCuCCCGCGgacAGCCccgGGCGgaGGGGGg -3' miRNA: 3'- -GAGuGGGUGC---UCGGa--UCGCaaCUCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 123038 | 0.69 | 0.785399 |
Target: 5'- cCUCGCCCACcagGGGCUUGGCGggccgaUGcaucAGGAg -3' miRNA: 3'- -GAGUGGGUG---CUCGGAUCGCa-----AC----UCCU- -5' |
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24706 | 5' | -55.7 | NC_005264.1 | + | 158236 | 0.7 | 0.736985 |
Target: 5'- -gCGCCUACGccgccgcGGCgCUGGCGggGAGGGc -3' miRNA: 3'- gaGUGGGUGC-------UCG-GAUCGCaaCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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