miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24707 3' -55.2 NC_005264.1 + 120779 0.68 0.843513
Target:  5'- gACGCCa-CGCGCCgCGGGCAAcGCGAu -3'
miRNA:   3'- -UGCGGggGUGUGGgGCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 64520 0.68 0.859468
Target:  5'- --cUCCCCAgCACCCUGGagagGCAAAGCAGu -3'
miRNA:   3'- ugcGGGGGU-GUGGGGCU----UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 113036 0.68 0.835236
Target:  5'- cGCGgCCCUGCACCUCGAcGCGGAGg-- -3'
miRNA:   3'- -UGCgGGGGUGUGGGGCU-UGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 35522 0.68 0.835236
Target:  5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3'
miRNA:   3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5'
24707 3' -55.2 NC_005264.1 + 38417 0.68 0.835236
Target:  5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3'
miRNA:   3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 9554 0.68 0.82677
Target:  5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 114290 0.68 0.849993
Target:  5'- aAUGCCCCCcucguauuuuuuCACCCCGcGGCAAAAg-- -3'
miRNA:   3'- -UGCGGGGGu-----------GUGGGGC-UUGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 56008 0.68 0.859468
Target:  5'- -aGUCCCCAgAUUCCGAAUuAAACAGc -3'
miRNA:   3'- ugCGGGGGUgUGGGGCUUGuUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 1958 0.68 0.859468
Target:  5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3'
miRNA:   3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5'
24707 3' -55.2 NC_005264.1 + 159571 0.68 0.851593
Target:  5'- gGCGCUgaaugCCCAC-CCaCCGAgaaGCGAGACGAg -3'
miRNA:   3'- -UGCGG-----GGGUGuGG-GGCU---UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 136931 0.69 0.791173
Target:  5'- aGCGCCCCCcgccaucuguuCGCCUgGGGCAucGCAAu -3'
miRNA:   3'- -UGCGGGGGu----------GUGGGgCUUGUuuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 54687 0.69 0.817248
Target:  5'- uACGCuCCCCGCGaggcucgacggccCCCCGAucccgGCGGAAUAc -3'
miRNA:   3'- -UGCG-GGGGUGU-------------GGGGCU-----UGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 95216 0.69 0.809302
Target:  5'- gACaCCCCUGCGCCCgcguggCGAACAAAACc- -3'
miRNA:   3'- -UGcGGGGGUGUGGG------GCUUGUUUUGuu -5'
24707 3' -55.2 NC_005264.1 + 66210 0.69 0.809302
Target:  5'- uGCGCCUCCGCGgCCagcgaaGGACuuGGCGAg -3'
miRNA:   3'- -UGCGGGGGUGUgGGg-----CUUGuuUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159961 0.69 0.791173
Target:  5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3'
miRNA:   3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5'
24707 3' -55.2 NC_005264.1 + 121693 0.69 0.781884
Target:  5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3'
miRNA:   3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5'
24707 3' -55.2 NC_005264.1 + 64797 0.69 0.772457
Target:  5'- aGCGCCCCCAUggGCaCCgGAagcGCAGGGCu- -3'
miRNA:   3'- -UGCGGGGGUG--UG-GGgCU---UGUUUUGuu -5'
24707 3' -55.2 NC_005264.1 + 161834 0.69 0.772457
Target:  5'- cUGCCCCCcCACCacaCGGgcGCGGGGCAAg -3'
miRNA:   3'- uGCGGGGGuGUGGg--GCU--UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 54241 0.69 0.77907
Target:  5'- gGCGgCCCCGCGCgCCaacgugucgaguggGAGCGGGGCGAg -3'
miRNA:   3'- -UGCgGGGGUGUGgGG--------------CUUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 40934 0.69 0.791173
Target:  5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3'
miRNA:   3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.