miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24707 3' -55.2 NC_005264.1 + 83815 0.72 0.610589
Target:  5'- uCGCCUCCACGCCgcauuuuaucggCCGAGCAAccucGGCAGg -3'
miRNA:   3'- uGCGGGGGUGUGG------------GGCUUGUU----UUGUU- -5'
24707 3' -55.2 NC_005264.1 + 84071 0.72 0.620946
Target:  5'- cCGCCCCCugGCUCau-GCGGAGCAGc -3'
miRNA:   3'- uGCGGGGGugUGGGgcuUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 86439 0.7 0.723585
Target:  5'- gGCGCCCuaugugCCACGCCCuCGAGgcGAACAc -3'
miRNA:   3'- -UGCGGG------GGUGUGGG-GCUUguUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 88294 0.78 0.318027
Target:  5'- gGCGCCCCCACua-CCGAaaGCAGGGCAGa -3'
miRNA:   3'- -UGCGGGGGUGuggGGCU--UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 90831 0.66 0.914441
Target:  5'- gGCGgCCgCGCACgUCGAGCAagAAACAGc -3'
miRNA:   3'- -UGCgGGgGUGUGgGGCUUGU--UUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 92212 0.67 0.874581
Target:  5'- gGCGUCCCCACGuuCCUccuggCGAGCgGGAACAAc -3'
miRNA:   3'- -UGCGGGGGUGU--GGG-----GCUUG-UUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 95216 0.69 0.809302
Target:  5'- gACaCCCCUGCGCCCgcguggCGAACAAAACc- -3'
miRNA:   3'- -UGcGGGGGUGUGGG------GCUUGUUUUGuu -5'
24707 3' -55.2 NC_005264.1 + 97391 0.78 0.332995
Target:  5'- -aGCCCCCAgGgCCCGAGCGAuGCGAc -3'
miRNA:   3'- ugCGGGGGUgUgGGGCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 101754 0.7 0.734552
Target:  5'- cGCGCuCCCCAaaggacgugguggcgGCCCUGAACGGAGCc- -3'
miRNA:   3'- -UGCG-GGGGUg--------------UGGGGCUUGUUUUGuu -5'
24707 3' -55.2 NC_005264.1 + 111473 0.67 0.895571
Target:  5'- -aGUCCCCuuCACCUCGgGGCAAAGCu- -3'
miRNA:   3'- ugCGGGGGu-GUGGGGC-UUGUUUUGuu -5'
24707 3' -55.2 NC_005264.1 + 113036 0.68 0.835236
Target:  5'- cGCGgCCCUGCACCUCGAcGCGGAGg-- -3'
miRNA:   3'- -UGCgGGGGUGUGGGGCU-UGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 114290 0.68 0.849993
Target:  5'- aAUGCCCCCcucguauuuuuuCACCCCGcGGCAAAAg-- -3'
miRNA:   3'- -UGCGGGGGu-----------GUGGGGC-UUGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 120779 0.68 0.843513
Target:  5'- gACGCCa-CGCGCCgCGGGCAAcGCGAu -3'
miRNA:   3'- -UGCGGggGUGUGGgGCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 120984 0.68 0.859468
Target:  5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3'
miRNA:   3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5'
24707 3' -55.2 NC_005264.1 + 121693 0.69 0.781884
Target:  5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3'
miRNA:   3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5'
24707 3' -55.2 NC_005264.1 + 122463 0.67 0.895571
Target:  5'- cGCGCCCgCGCugCUC--GCAAAGCGc -3'
miRNA:   3'- -UGCGGGgGUGugGGGcuUGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 123187 0.66 0.925807
Target:  5'- uUGCCgCCCACGCCgCGGugugGgGAAGCGGa -3'
miRNA:   3'- uGCGG-GGGUGUGGgGCU----UgUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 128231 1.05 0.005417
Target:  5'- cACGCCCCCACACCCCGAACAAAACAAu -3'
miRNA:   3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 128581 0.68 0.82677
Target:  5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 129921 0.73 0.589933
Target:  5'- gGCGCCCCCGCgACCCCuGcGCGAu-CGAg -3'
miRNA:   3'- -UGCGGGGGUG-UGGGG-CuUGUUuuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.