Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 121693 | 0.69 | 0.781884 |
Target: 5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3' miRNA: 3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 30079 | 0.75 | 0.47995 |
Target: 5'- gGCGCCgCCGCGCCC-GGACAGAaucGCGAg -3' miRNA: 3'- -UGCGGgGGUGUGGGgCUUGUUU---UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 154504 | 0.66 | 0.925807 |
Target: 5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3' miRNA: 3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 130493 | 0.67 | 0.888804 |
Target: 5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3' miRNA: 3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 157444 | 0.68 | 0.835236 |
Target: 5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3' miRNA: 3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 97391 | 0.78 | 0.332995 |
Target: 5'- -aGCCCCCAgGgCCCGAGCGAuGCGAc -3' miRNA: 3'- ugCGGGGGUgUgGGGCUUGUUuUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 64347 | 0.67 | 0.881094 |
Target: 5'- gGCGCCUCCggcagauacuuuaGCACCCC--ACGGAGCu- -3' miRNA: 3'- -UGCGGGGG-------------UGUGGGGcuUGUUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 88294 | 0.78 | 0.318027 |
Target: 5'- gGCGCCCCCACua-CCGAaaGCAGGGCAGa -3' miRNA: 3'- -UGCGGGGGUGuggGGCU--UGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 128231 | 1.05 | 0.005417 |
Target: 5'- cACGCCCCCACACCCCGAACAAAACAAu -3' miRNA: 3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 82966 | 0.68 | 0.835236 |
Target: 5'- uCGCCgCCGCGCCCCcguGACGAAGg-- -3' miRNA: 3'- uGCGGgGGUGUGGGGc--UUGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 64743 | 0.66 | 0.913847 |
Target: 5'- gUGCCCCgCGCaaggaucGCCCUGAuagauuuggccGCGAAACGAu -3' miRNA: 3'- uGCGGGG-GUG-------UGGGGCU-----------UGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 7903 | 0.72 | 0.652035 |
Target: 5'- gACGuCCCCCACGCUCUGGcuaGCAAcGCGc -3' miRNA: 3'- -UGC-GGGGGUGUGGGGCU---UGUUuUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 143581 | 0.73 | 0.569403 |
Target: 5'- cCGUCCCCGgGgCCCGGAgGGAACGAg -3' miRNA: 3'- uGCGGGGGUgUgGGGCUUgUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 47119 | 0.67 | 0.867133 |
Target: 5'- cGCGCCCCCuacCAUgCCGGAUGAcuugguGGCGAu -3' miRNA: 3'- -UGCGGGGGu--GUGgGGCUUGUU------UUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38375 | 0.67 | 0.895571 |
Target: 5'- cCGCUUCCGCACCUCGcucucgaAAGACAAg -3' miRNA: 3'- uGCGGGGGUGUGGGGCuug----UUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 159384 | 0.66 | 0.930603 |
Target: 5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3' miRNA: 3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 149562 | 0.67 | 0.895571 |
Target: 5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3' miRNA: 3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 9554 | 0.68 | 0.82677 |
Target: 5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3' miRNA: 3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 35522 | 0.68 | 0.835236 |
Target: 5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3' miRNA: 3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38417 | 0.68 | 0.835236 |
Target: 5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3' miRNA: 3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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