miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24707 3' -55.2 NC_005264.1 + 49143 0.69 0.809302
Target:  5'- gGCGCCUCUgcccaagccuuGCACCCCGAcCAucACGu -3'
miRNA:   3'- -UGCGGGGG-----------UGUGGGGCUuGUuuUGUu -5'
24707 3' -55.2 NC_005264.1 + 67502 0.66 0.931123
Target:  5'- uCGgCCCCAUugCCuCGGaucacGCGAGACAc -3'
miRNA:   3'- uGCgGGGGUGugGG-GCU-----UGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 35477 0.66 0.925807
Target:  5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3'
miRNA:   3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5'
24707 3' -55.2 NC_005264.1 + 4160 0.66 0.925807
Target:  5'- uUGCCgCCCACGCCgCGGugugGgGAAGCGGa -3'
miRNA:   3'- uGCGG-GGGUGUGGgGCU----UgUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 149562 0.67 0.895571
Target:  5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3'
miRNA:   3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5'
24707 3' -55.2 NC_005264.1 + 9204 1.05 0.005417
Target:  5'- cACGCCCCCACACCCCGAACAAAACAAu -3'
miRNA:   3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 120779 0.68 0.843513
Target:  5'- gACGCCa-CGCGCCgCGGGCAAcGCGAu -3'
miRNA:   3'- -UGCGGggGUGUGGgGCUUGUUuUGUU- -5'
24707 3' -55.2 NC_005264.1 + 113036 0.68 0.835236
Target:  5'- cGCGgCCCUGCACCUCGAcGCGGAGg-- -3'
miRNA:   3'- -UGCgGGGGUGUGGGGCU-UGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 35522 0.68 0.835236
Target:  5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3'
miRNA:   3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5'
24707 3' -55.2 NC_005264.1 + 38417 0.68 0.835236
Target:  5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3'
miRNA:   3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 9554 0.68 0.82677
Target:  5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5'
24707 3' -55.2 NC_005264.1 + 56008 0.68 0.859468
Target:  5'- -aGUCCCCAgAUUCCGAAUuAAACAGc -3'
miRNA:   3'- ugCGGGGGUgUGGGGCUUGuUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 1958 0.68 0.859468
Target:  5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3'
miRNA:   3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5'
24707 3' -55.2 NC_005264.1 + 64520 0.68 0.859468
Target:  5'- --cUCCCCAgCACCCUGGagagGCAAAGCAGu -3'
miRNA:   3'- ugcGGGGGU-GUGGGGCU----UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 159571 0.68 0.851593
Target:  5'- gGCGCUgaaugCCCAC-CCaCCGAgaaGCGAGACGAg -3'
miRNA:   3'- -UGCGG-----GGGUGuGG-GGCU---UGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 144309 0.71 0.71353
Target:  5'- cGCGCCCUCagggggagacgGCGcCCCCGAucgGCAAGGCGu -3'
miRNA:   3'- -UGCGGGGG-----------UGU-GGGGCU---UGUUUUGUu -5'
24707 3' -55.2 NC_005264.1 + 46422 0.71 0.703404
Target:  5'- gACGCCCCCAgcgacCugCCgCGGGCucAGCGAg -3'
miRNA:   3'- -UGCGGGGGU-----GugGG-GCUUGuuUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 84071 0.72 0.620946
Target:  5'- cCGCCCCCugGCUCau-GCGGAGCAGc -3'
miRNA:   3'- uGCGGGGGugUGGGgcuUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 40445 0.73 0.600249
Target:  5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3'
miRNA:   3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5'
24707 3' -55.2 NC_005264.1 + 129921 0.73 0.589933
Target:  5'- gGCGCCCCCGCgACCCCuGcGCGAu-CGAg -3'
miRNA:   3'- -UGCGGGGGUG-UGGGG-CuUGUUuuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.