Results 41 - 60 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 11466 | 0.67 | 0.888804 |
Target: 5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3' miRNA: 3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 111473 | 0.67 | 0.895571 |
Target: 5'- -aGUCCCCuuCACCUCGgGGCAAAGCu- -3' miRNA: 3'- ugCGGGGGu-GUGGGGC-UUGUUUUGuu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 149562 | 0.67 | 0.895571 |
Target: 5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3' miRNA: 3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 3436 | 0.67 | 0.895571 |
Target: 5'- cGCGCCCgCGCugCUC--GCAAAGCGc -3' miRNA: 3'- -UGCGGGgGUGugGGGcuUGUUUUGUu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 40056 | 0.67 | 0.902101 |
Target: 5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3' miRNA: 3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 64797 | 0.69 | 0.772457 |
Target: 5'- aGCGCCCCCAUggGCaCCgGAagcGCAGGGCu- -3' miRNA: 3'- -UGCGGGGGUG--UG-GGgCU---UGUUUUGuu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 121693 | 0.69 | 0.781884 |
Target: 5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3' miRNA: 3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 159961 | 0.69 | 0.791173 |
Target: 5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3' miRNA: 3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 66210 | 0.69 | 0.809302 |
Target: 5'- uGCGCCUCCGCGgCCagcgaaGGACuuGGCGAg -3' miRNA: 3'- -UGCGGGGGUGUgGGg-----CUUGuuUUGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 95216 | 0.69 | 0.809302 |
Target: 5'- gACaCCCCUGCGCCCgcguggCGAACAAAACc- -3' miRNA: 3'- -UGcGGGGGUGUGGG------GCUUGUUUUGuu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 54687 | 0.69 | 0.817248 |
Target: 5'- uACGCuCCCCGCGaggcucgacggccCCCCGAucccgGCGGAAUAc -3' miRNA: 3'- -UGCG-GGGGUGU-------------GGGGCU-----UGUUUUGUu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 80429 | 0.7 | 0.73356 |
Target: 5'- cUGCCCCCGCcagcuCUCCGGGCAuccAAACGu -3' miRNA: 3'- uGCGGGGGUGu----GGGGCUUGU---UUUGUu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 7903 | 0.72 | 0.652035 |
Target: 5'- gACGuCCCCCACGCUCUGGcuaGCAAcGCGc -3' miRNA: 3'- -UGC-GGGGGUGUGGGGCU---UGUUuUGUu -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 83815 | 0.72 | 0.610589 |
Target: 5'- uCGCCUCCACGCCgcauuuuaucggCCGAGCAAccucGGCAGg -3' miRNA: 3'- uGCGGGGGUGUGG------------GGCUUGUU----UUGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 159472 | 0.73 | 0.600249 |
Target: 5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3' miRNA: 3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 143581 | 0.73 | 0.569403 |
Target: 5'- cCGUCCCCGgGgCCCGGAgGGAACGAg -3' miRNA: 3'- uGCGGGGGUgUgGGGCUUgUUUUGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 30079 | 0.75 | 0.47995 |
Target: 5'- gGCGCCgCCGCGCCC-GGACAGAaucGCGAg -3' miRNA: 3'- -UGCGGgGGUGUGGGgCUUGUUU---UGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 97391 | 0.78 | 0.332995 |
Target: 5'- -aGCCCCCAgGgCCCGAGCGAuGCGAc -3' miRNA: 3'- ugCGGGGGUgUgGGGCUUGUUuUGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 88294 | 0.78 | 0.318027 |
Target: 5'- gGCGCCCCCACua-CCGAaaGCAGGGCAGa -3' miRNA: 3'- -UGCGGGGGUGuggGGCU--UGUUUUGUU- -5' |
|||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 159384 | 0.66 | 0.930603 |
Target: 5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3' miRNA: 3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home