Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 1958 | 0.68 | 0.859468 |
Target: 5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3' miRNA: 3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 2666 | 0.69 | 0.781884 |
Target: 5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3' miRNA: 3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 3436 | 0.67 | 0.895571 |
Target: 5'- cGCGCCCgCGCugCUC--GCAAAGCGc -3' miRNA: 3'- -UGCGGGgGUGugGGGcuUGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 4160 | 0.66 | 0.925807 |
Target: 5'- uUGCCgCCCACGCCgCGGugugGgGAAGCGGa -3' miRNA: 3'- uGCGG-GGGUGUGGgGCU----UgUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 7903 | 0.72 | 0.652035 |
Target: 5'- gACGuCCCCCACGCUCUGGcuaGCAAcGCGc -3' miRNA: 3'- -UGC-GGGGGUGUGGGGCU---UGUUuUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 9204 | 1.05 | 0.005417 |
Target: 5'- cACGCCCCCACACCCCGAACAAAACAAu -3' miRNA: 3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 9554 | 0.68 | 0.82677 |
Target: 5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3' miRNA: 3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 11466 | 0.67 | 0.888804 |
Target: 5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3' miRNA: 3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 28755 | 0.66 | 0.914441 |
Target: 5'- uACGUCUCC-CAgCCUGAcaGCAGGACAu -3' miRNA: 3'- -UGCGGGGGuGUgGGGCU--UGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 28916 | 0.66 | 0.933181 |
Target: 5'- cACGCCCCCAauauuauccuccuccCACCCCcAAaaaAAAACc- -3' miRNA: 3'- -UGCGGGGGU---------------GUGGGGcUUg--UUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 30079 | 0.75 | 0.47995 |
Target: 5'- gGCGCCgCCGCGCCC-GGACAGAaucGCGAg -3' miRNA: 3'- -UGCGGgGGUGUGGGgCUUGUUU---UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 35477 | 0.66 | 0.925807 |
Target: 5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3' miRNA: 3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 35522 | 0.68 | 0.835236 |
Target: 5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3' miRNA: 3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38375 | 0.67 | 0.895571 |
Target: 5'- cCGCUUCCGCACCUCGcucucgaAAGACAAg -3' miRNA: 3'- uGCGGGGGUGUGGGGCuug----UUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38417 | 0.68 | 0.835236 |
Target: 5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3' miRNA: 3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38717 | 0.67 | 0.879663 |
Target: 5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3' miRNA: 3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 40056 | 0.67 | 0.902101 |
Target: 5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3' miRNA: 3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 40357 | 0.66 | 0.930603 |
Target: 5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3' miRNA: 3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 40445 | 0.73 | 0.600249 |
Target: 5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3' miRNA: 3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 40934 | 0.69 | 0.791173 |
Target: 5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3' miRNA: 3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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