Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24707 | 3' | -55.2 | NC_005264.1 | + | 38375 | 0.67 | 0.895571 |
Target: 5'- cCGCUUCCGCACCUCGcucucgaAAGACAAg -3' miRNA: 3'- uGCGGGGGUGUGGGGCuug----UUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 111473 | 0.67 | 0.895571 |
Target: 5'- -aGUCCCCuuCACCUCGgGGCAAAGCu- -3' miRNA: 3'- ugCGGGGGu-GUGGGGC-UUGUUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 149562 | 0.67 | 0.895571 |
Target: 5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3' miRNA: 3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 3436 | 0.67 | 0.895571 |
Target: 5'- cGCGCCCgCGCugCUC--GCAAAGCGc -3' miRNA: 3'- -UGCGGGgGUGugGGGcuUGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 11466 | 0.67 | 0.888804 |
Target: 5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3' miRNA: 3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 130493 | 0.67 | 0.888804 |
Target: 5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3' miRNA: 3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 76068 | 0.67 | 0.881806 |
Target: 5'- gACGCCgCgACGCCgCGAGCGucGACGg -3' miRNA: 3'- -UGCGGgGgUGUGGgGCUUGUu-UUGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 64347 | 0.67 | 0.881094 |
Target: 5'- gGCGCCUCCggcagauacuuuaGCACCCC--ACGGAGCu- -3' miRNA: 3'- -UGCGGGGG-------------UGUGGGGcuUGUUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 157743 | 0.67 | 0.879663 |
Target: 5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3' miRNA: 3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 38717 | 0.67 | 0.879663 |
Target: 5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3' miRNA: 3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 45057 | 0.67 | 0.874581 |
Target: 5'- gAUGCCg-CGCAgUCCGAGCAGAACAAc -3' miRNA: 3'- -UGCGGggGUGUgGGGCUUGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 92212 | 0.67 | 0.874581 |
Target: 5'- gGCGUCCCCACGuuCCUccuggCGAGCgGGAACAAc -3' miRNA: 3'- -UGCGGGGGUGU--GGG-----GCUUG-UUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 47119 | 0.67 | 0.867133 |
Target: 5'- cGCGCCCCCuacCAUgCCGGAUGAcuugguGGCGAu -3' miRNA: 3'- -UGCGGGGGu--GUGgGGCUUGUU------UUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 58264 | 0.68 | 0.859468 |
Target: 5'- uACGCUucgagCCCGCuGCCuuGGACAGAGCu- -3' miRNA: 3'- -UGCGG-----GGGUG-UGGggCUUGUUUUGuu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 120984 | 0.68 | 0.859468 |
Target: 5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3' miRNA: 3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 56008 | 0.68 | 0.859468 |
Target: 5'- -aGUCCCCAgAUUCCGAAUuAAACAGc -3' miRNA: 3'- ugCGGGGGUgUGGGGCUUGuUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 1958 | 0.68 | 0.859468 |
Target: 5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3' miRNA: 3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 64520 | 0.68 | 0.859468 |
Target: 5'- --cUCCCCAgCACCCUGGagagGCAAAGCAGu -3' miRNA: 3'- ugcGGGGGU-GUGGGGCU----UGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 159571 | 0.68 | 0.851593 |
Target: 5'- gGCGCUgaaugCCCAC-CCaCCGAgaaGCGAGACGAg -3' miRNA: 3'- -UGCGG-----GGGUGuGG-GGCU---UGUUUUGUU- -5' |
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24707 | 3' | -55.2 | NC_005264.1 | + | 114290 | 0.68 | 0.849993 |
Target: 5'- aAUGCCCCCcucguauuuuuuCACCCCGcGGCAAAAg-- -3' miRNA: 3'- -UGCGGGGGu-----------GUGGGGC-UUGUUUUguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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