miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24707 5' -45.6 NC_005264.1 + 149955 0.66 0.999994
Target:  5'- cGGCucgacggUCCGUCCGGGu--------- -3'
miRNA:   3'- -CCGuua----AGGCAGGCCCcaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 100021 0.66 0.999994
Target:  5'- -aUAGUguggCCGUCCGGGGg-------- -3'
miRNA:   3'- ccGUUAa---GGCAGGCCCCaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 151620 0.66 0.999991
Target:  5'- gGGUucgggUCGUCUGGGGUUUa----- -3'
miRNA:   3'- -CCGuuaa-GGCAGGCCCCAAAaaaaag -5'
24707 5' -45.6 NC_005264.1 + 42868 0.66 0.99999
Target:  5'- uGGCAugugucucaacacgUCGUCCGGGGUa------- -3'
miRNA:   3'- -CCGUuaa-----------GGCAGGCCCCAaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 30929 0.67 0.999975
Target:  5'- cGGCucgacgUCCGUCCGGGu--------- -3'
miRNA:   3'- -CCGuua---AGGCAGGCCCcaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 99808 0.68 0.999893
Target:  5'- aGGCGAUggucgCCGaccCCGGGGUa------- -3'
miRNA:   3'- -CCGUUAa----GGCa--GGCCCCAaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 2769 0.68 0.999893
Target:  5'- cGGCGccGUaCCGUCUGGGGa-------- -3'
miRNA:   3'- -CCGU--UAaGGCAGGCCCCaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 121795 0.68 0.999893
Target:  5'- cGGCGccGUaCCGUCUGGGGa-------- -3'
miRNA:   3'- -CCGU--UAaGGCAGGCCCCaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 5075 0.71 0.998005
Target:  5'- aGGCGGccagcCCGUCCGGGGa-------- -3'
miRNA:   3'- -CCGUUaa---GGCAGGCCCCaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 124102 0.71 0.998005
Target:  5'- aGGCGGccagcCCGUCCGGGGa-------- -3'
miRNA:   3'- -CCGUUaa---GGCAGGCCCCaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 44841 0.71 0.997607
Target:  5'- cGGCGAagugUCCGUCCGGGu--------- -3'
miRNA:   3'- -CCGUUa---AGGCAGGCCCcaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 132757 0.71 0.997144
Target:  5'- cGCGAUUCUGUCCGGGc--------- -3'
miRNA:   3'- cCGUUAAGGCAGGCCCcaaaaaaaag -5'
24707 5' -45.6 NC_005264.1 + 128265 1.14 0.017208
Target:  5'- aGGCAAUUCCGUCCGGGGUUUUUUUUCu -3'
miRNA:   3'- -CCGUUAAGGCAGGCCCCAAAAAAAAG- -5'
24707 5' -45.6 NC_005264.1 + 9238 1.14 0.017208
Target:  5'- aGGCAAUUCCGUCCGGGGUUUUUUUUCu -3'
miRNA:   3'- -CCGUUAAGGCAGGCCCCAAAAAAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.