Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 9587 | 1.11 | 0.008786 |
Target: 5'- uCGUCUAUCGCUCAAAGUACAGGCGACg -3' miRNA: 3'- -GCAGAUAGCGAGUUUCAUGUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 128614 | 1.11 | 0.008786 |
Target: 5'- uCGUCUAUCGCUCAAAGUACAGGCGACg -3' miRNA: 3'- -GCAGAUAGCGAGUUUCAUGUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 139721 | 0.82 | 0.454816 |
Target: 5'- aCGUCUAucucUCGCUCGuuGggagGCGGGCGGCa -3' miRNA: 3'- -GCAGAU----AGCGAGUuuCa---UGUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 28136 | 0.77 | 0.734575 |
Target: 5'- uCGUCUG-CGCUUugauucgccAGUGCGGGCGGCu -3' miRNA: 3'- -GCAGAUaGCGAGuu-------UCAUGUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 123846 | 0.74 | 0.838673 |
Target: 5'- cCGUC-GUCGCUCugcAGGUGuuccgcCAGGCGGCa -3' miRNA: 3'- -GCAGaUAGCGAGu--UUCAU------GUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 4820 | 0.74 | 0.838673 |
Target: 5'- cCGUC-GUCGCUCugcAGGUGuuccgcCAGGCGGCa -3' miRNA: 3'- -GCAGaUAGCGAGu--UUCAU------GUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 48701 | 0.72 | 0.924444 |
Target: 5'- uCGUCgcgGUCGCUCGcGGgagAUgAGGCGGCc -3' miRNA: 3'- -GCAGa--UAGCGAGUuUCa--UG-UCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 17249 | 0.71 | 0.949488 |
Target: 5'- uCGUCgGUCGCuUCAAAG-ACggucgucaacggAGGCGACg -3' miRNA: 3'- -GCAGaUAGCG-AGUUUCaUG------------UCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 34764 | 0.71 | 0.953732 |
Target: 5'- cCG-CUGUCGCUacaCGAAGaugagccgcucaUGCGGGCGGCc -3' miRNA: 3'- -GCaGAUAGCGA---GUUUC------------AUGUCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 50026 | 0.7 | 0.961484 |
Target: 5'- uCGUag--CGCUCAGAGaACAGGCGuuuCa -3' miRNA: 3'- -GCAgauaGCGAGUUUCaUGUCCGCu--G- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 126819 | 0.7 | 0.971345 |
Target: 5'- -----cUCGCUCAGAGUAUuGGCGGg -3' miRNA: 3'- gcagauAGCGAGUUUCAUGuCCGCUg -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 80533 | 0.7 | 0.971345 |
Target: 5'- aCGUC-GUCGCcccCAAacAGUACGGcGCGGCa -3' miRNA: 3'- -GCAGaUAGCGa--GUU--UCAUGUC-CGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 48383 | 0.7 | 0.974187 |
Target: 5'- gCGUCgaggCGCUCGAcGUucguCgAGGCGACg -3' miRNA: 3'- -GCAGaua-GCGAGUUuCAu---G-UCCGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 74642 | 0.69 | 0.981481 |
Target: 5'- cCGUCag-CGCgaaccCAGGGUGCAGGCcGCu -3' miRNA: 3'- -GCAGauaGCGa----GUUUCAUGUCCGcUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 7903 | 0.69 | 0.98353 |
Target: 5'- gGUCUccUCGC-CGGAGUACugGGGgGACg -3' miRNA: 3'- gCAGAu-AGCGaGUUUCAUG--UCCgCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 162247 | 0.69 | 0.98353 |
Target: 5'- aGUCgccUCGCUgcCGGAGU-CGGGCGAg -3' miRNA: 3'- gCAGau-AGCGA--GUUUCAuGUCCGCUg -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 126929 | 0.69 | 0.98353 |
Target: 5'- gGUCUccUCGC-CGGAGUACugGGGgGACg -3' miRNA: 3'- gCAGAu-AGCGaGUUUCAUG--UCCgCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 117011 | 0.69 | 0.98353 |
Target: 5'- gGUCUG-CGCggcgCAugacGAGUACAGcGCGAUc -3' miRNA: 3'- gCAGAUaGCGa---GU----UUCAUGUC-CGCUG- -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 6459 | 0.69 | 0.98353 |
Target: 5'- uCGUCg--CGCUCAGGGU-CAcGGUGAa -3' miRNA: 3'- -GCAGauaGCGAGUUUCAuGU-CCGCUg -5' |
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24708 | 5' | -49.7 | NC_005264.1 | + | 124461 | 0.69 | 0.985403 |
Target: 5'- uGUCUuUCGagagCGAGGUGCGGaaGCGGCg -3' miRNA: 3'- gCAGAuAGCga--GUUUCAUGUC--CGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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