Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 139721 | 0.82 | 0.454816 |
Target: 5'- aCGUCUAucucUCGCUCGuuGggagGCGGGCGGCa -3' miRNA: 3'- -GCAGAU----AGCGAGUuuCa---UGUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 7903 | 0.69 | 0.98353 |
Target: 5'- gGUCUccUCGC-CGGAGUACugGGGgGACg -3' miRNA: 3'- gCAGAu-AGCGaGUUUCAUG--UCCgCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 74642 | 0.69 | 0.981481 |
Target: 5'- cCGUCag-CGCgaaccCAGGGUGCAGGCcGCu -3' miRNA: 3'- -GCAGauaGCGa----GUUUCAUGUCCGcUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 80533 | 0.7 | 0.971345 |
Target: 5'- aCGUC-GUCGCcccCAAacAGUACGGcGCGGCa -3' miRNA: 3'- -GCAGaUAGCGa--GUU--UCAUGUC-CGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 126819 | 0.7 | 0.971345 |
Target: 5'- -----cUCGCUCAGAGUAUuGGCGGg -3' miRNA: 3'- gcagauAGCGAGUUUCAUGuCCGCUg -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 50026 | 0.7 | 0.961484 |
Target: 5'- uCGUag--CGCUCAGAGaACAGGCGuuuCa -3' miRNA: 3'- -GCAgauaGCGAGUUUCaUGUCCGCu--G- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 48701 | 0.72 | 0.924444 |
Target: 5'- uCGUCgcgGUCGCUCGcGGgagAUgAGGCGGCc -3' miRNA: 3'- -GCAGa--UAGCGAGUuUCa--UG-UCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 4820 | 0.74 | 0.838673 |
Target: 5'- cCGUC-GUCGCUCugcAGGUGuuccgcCAGGCGGCa -3' miRNA: 3'- -GCAGaUAGCGAGu--UUCAU------GUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 28136 | 0.77 | 0.734575 |
Target: 5'- uCGUCUG-CGCUUugauucgccAGUGCGGGCGGCu -3' miRNA: 3'- -GCAGAUaGCGAGuu-------UCAUGUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 162247 | 0.69 | 0.98353 |
Target: 5'- aGUCgccUCGCUgcCGGAGU-CGGGCGAg -3' miRNA: 3'- gCAGau-AGCGA--GUUUCAuGUCCGCUg -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 124461 | 0.69 | 0.985403 |
Target: 5'- uGUCUuUCGagagCGAGGUGCGGaaGCGGCg -3' miRNA: 3'- gCAGAuAGCga--GUUUCAUGUC--CGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 90441 | 0.68 | 0.987109 |
Target: 5'- cCGUagagAUCGCUC-AGGU--GGGCGGCg -3' miRNA: 3'- -GCAga--UAGCGAGuUUCAugUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 58442 | 0.66 | 0.997889 |
Target: 5'- gCGUC-GUCGUUCcAGGUuguCGGGCGcCa -3' miRNA: 3'- -GCAGaUAGCGAGuUUCAu--GUCCGCuG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 110132 | 0.66 | 0.997483 |
Target: 5'- cCGcCg--CGCUUuuGGggGCGGGCGGCg -3' miRNA: 3'- -GCaGauaGCGAGuuUCa-UGUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 26741 | 0.67 | 0.996474 |
Target: 5'- uCGUCgucGUCGCUCAucGUua--GCGACa -3' miRNA: 3'- -GCAGa--UAGCGAGUuuCAugucCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 98658 | 0.67 | 0.995857 |
Target: 5'- gGUUcc-UGCUCGAcccAGUGCuGGCGGCg -3' miRNA: 3'- gCAGauaGCGAGUU---UCAUGuCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 93227 | 0.67 | 0.995857 |
Target: 5'- aGcCUGUCGUUCucacgcCGGGCGGCg -3' miRNA: 3'- gCaGAUAGCGAGuuucauGUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 131415 | 0.67 | 0.995154 |
Target: 5'- uGUUUGUgGUUUAgcuAAGUGC-GGCGGCa -3' miRNA: 3'- gCAGAUAgCGAGU---UUCAUGuCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 82239 | 0.67 | 0.994357 |
Target: 5'- uGUCUcguUUGCUUucGGggcucgcgACAGGCGGCa -3' miRNA: 3'- gCAGAu--AGCGAGuuUCa-------UGUCCGCUG- -5' |
|||||||
24708 | 5' | -49.7 | NC_005264.1 | + | 113368 | 0.68 | 0.991317 |
Target: 5'- cCGUCgaauacggCGCgggUCAGGGUuauGCAGGCGAg -3' miRNA: 3'- -GCAGaua-----GCG---AGUUUCA---UGUCCGCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home