Results 21 - 40 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 3089 | 0.66 | 0.591967 |
Target: 5'- -gCgGCCgaggACCCGUUcgGGcgauUCCCGGCCCc -3' miRNA: 3'- ugGgCGG----UGGGCGAa-CC----AGGGUCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 87122 | 0.66 | 0.582335 |
Target: 5'- cUCCGgCGCCCGCggGGcgCaCCAGUCUu -3' miRNA: 3'- uGGGCgGUGGGCGaaCCa-G-GGUCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 42133 | 0.66 | 0.572735 |
Target: 5'- cGCCCGaCCGCCggcuuugucggCGCgaggccuuguUUGGUCCCuguAGCUCu -3' miRNA: 3'- -UGGGC-GGUGG-----------GCG----------AACCAGGG---UCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 124862 | 0.67 | 0.563173 |
Target: 5'- -gCCGCCACUCGCcUGG-CCgCGguuaucGCCCu -3' miRNA: 3'- ugGGCGGUGGGCGaACCaGG-GU------CGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 109757 | 0.67 | 0.563173 |
Target: 5'- cACCaGCUuagacacuCCCGC-UGGUCCgCGGCCa -3' miRNA: 3'- -UGGgCGGu-------GGGCGaACCAGG-GUCGGg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 5836 | 0.67 | 0.563173 |
Target: 5'- -gCCGCCACUCGCcUGG-CCgCGguuaucGCCCu -3' miRNA: 3'- ugGGCGGUGGGCGaACCaGG-GU------CGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 97992 | 0.67 | 0.553654 |
Target: 5'- gACCCGCgCACCggggauccaguaCGCaUGGUgCUGGCCg -3' miRNA: 3'- -UGGGCG-GUGG------------GCGaACCAgGGUCGGg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 7651 | 0.67 | 0.553654 |
Target: 5'- aACgCCGCCugCCgGCUcGGagggCUCGGCCUc -3' miRNA: 3'- -UG-GGCGGugGG-CGAaCCa---GGGUCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 126678 | 0.67 | 0.553654 |
Target: 5'- aACgCCGCCugCCgGCUcGGagggCUCGGCCUc -3' miRNA: 3'- -UG-GGCGGugGG-CGAaCCa---GGGUCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 73169 | 0.67 | 0.553654 |
Target: 5'- uGCCCaCCGCCaGCUc-GUCUCAGCUCa -3' miRNA: 3'- -UGGGcGGUGGgCGAacCAGGGUCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 63051 | 0.67 | 0.553654 |
Target: 5'- cGCCUcgGCCGCCUugauCUcGGUCuCCAGCUCg -3' miRNA: 3'- -UGGG--CGGUGGGc---GAaCCAG-GGUCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 116764 | 0.67 | 0.541353 |
Target: 5'- cGCCCGCCGuCCCGCUuuuauaccacagaaUGGcUUCCGGg-- -3' miRNA: 3'- -UGGGCGGU-GGGCGA--------------ACC-AGGGUCggg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 158409 | 0.67 | 0.538527 |
Target: 5'- uGCCCGCCGCCCGUcacuaaugagggaGGUUCaCAGUa- -3' miRNA: 3'- -UGGGCGGUGGGCGaa-----------CCAGG-GUCGgg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 40996 | 0.67 | 0.534767 |
Target: 5'- cUCCGCCaACCCGUUuaggUGGgcUCCCAGgCa -3' miRNA: 3'- uGGGCGG-UGGGCGA----ACC--AGGGUCgGg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 39741 | 0.67 | 0.534767 |
Target: 5'- cGCCCGUgCAacagcCCCGCUgucgGGagaUCCCGucGCCCa -3' miRNA: 3'- -UGGGCG-GU-----GGGCGAa---CC---AGGGU--CGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 158767 | 0.67 | 0.534767 |
Target: 5'- cGCCCGUgCAacagcCCCGCUgucgGGagaUCCCGucGCCCa -3' miRNA: 3'- -UGGGCG-GU-----GGGCGAa---CC---AGGGU--CGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 160023 | 0.67 | 0.534767 |
Target: 5'- cUCCGCCaACCCGUUuaggUGGgcUCCCAGgCa -3' miRNA: 3'- uGGGCGG-UGGGCGA----ACC--AGGGUCgGg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 53230 | 0.67 | 0.534767 |
Target: 5'- cGCCCacGCCAUuuGCUU--UCCguGCCCc -3' miRNA: 3'- -UGGG--CGGUGggCGAAccAGGguCGGG- -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 160158 | 0.67 | 0.534767 |
Target: 5'- cUCCGCCACCaCGCUgcccucgcGGUCggGGCCa -3' miRNA: 3'- uGGGCGGUGG-GCGAa-------CCAGggUCGGg -5' |
|||||||
24709 | 3' | -63.4 | NC_005264.1 | + | 41131 | 0.67 | 0.534767 |
Target: 5'- cUCCGCCACCaCGCUgcccucgcGGUCggGGCCa -3' miRNA: 3'- uGGGCGGUGG-GCGAa-------CCAGggUCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home