miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24710 3' -44.9 NC_005264.1 + 115545 0.66 0.999996
Target:  5'- gUCGgGCCCauggCGUACGUGUAc----- -3'
miRNA:   3'- aAGCgUGGGa---GCAUGUAUAUauauau -5'
24710 3' -44.9 NC_005264.1 + 113506 0.66 0.999994
Target:  5'- -cCGCgACCCUCGUACAc--------- -3'
miRNA:   3'- aaGCG-UGGGAGCAUGUauauauauau -5'
24710 3' -44.9 NC_005264.1 + 57486 0.66 0.999991
Target:  5'- -aCGCGCaCCUCGUGCAg--------- -3'
miRNA:   3'- aaGCGUG-GGAGCAUGUauauauauau -5'
24710 3' -44.9 NC_005264.1 + 110095 0.67 0.999974
Target:  5'- aUCGUACCCUCGc-CGUGUGa----- -3'
miRNA:   3'- aAGCGUGGGAGCauGUAUAUauauau -5'
24710 3' -44.9 NC_005264.1 + 70773 0.68 0.999848
Target:  5'- -cCGC-CCCUCGUGCGUAc------- -3'
miRNA:   3'- aaGCGuGGGAGCAUGUAUauauauau -5'
24710 3' -44.9 NC_005264.1 + 51302 0.7 0.998738
Target:  5'- --gGCACCCUCGUGCAcGUcgGcGUGc -3'
miRNA:   3'- aagCGUGGGAGCAUGUaUAuaUaUAU- -5'
24710 3' -44.9 NC_005264.1 + 81297 0.78 0.890925
Target:  5'- gUUCGUAUCCgcgcagCGUGCAUGUGUAUGUc -3'
miRNA:   3'- -AAGCGUGGGa-----GCAUGUAUAUAUAUAu -5'
24710 3' -44.9 NC_005264.1 + 144075 0.83 0.699015
Target:  5'- aUUCGCACCUcUGUACAUAUAUAUAa- -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUau -5'
24710 3' -44.9 NC_005264.1 + 11597 0.87 0.499309
Target:  5'- aUUCGCACCCcUGUACAUAUAUAUAg- -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUau -5'
24710 3' -44.9 NC_005264.1 + 130624 0.87 0.499309
Target:  5'- aUUCGCACCCcUGUACAUAUAUAUAg- -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUau -5'
24710 3' -44.9 NC_005264.1 + 32613 0.91 0.304801
Target:  5'- aUUCGCACCCcUGUACAUAUAUAUAUAg -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUAU- -5'
24710 3' -44.9 NC_005264.1 + 32178 0.91 0.304801
Target:  5'- aUUCGCACCCcUGUACAUAUAUAUAUAa -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUAU- -5'
24710 3' -44.9 NC_005264.1 + 151205 0.91 0.304801
Target:  5'- aUUCGCACCCcUGUACAUAUAUAUAUAa -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUAU- -5'
24710 3' -44.9 NC_005264.1 + 151640 0.91 0.304801
Target:  5'- aUUCGCACCCcUGUACAUAUAUAUAUAg -3'
miRNA:   3'- -AAGCGUGGGaGCAUGUAUAUAUAUAU- -5'
24710 3' -44.9 NC_005264.1 + 18725 0.95 0.188977
Target:  5'- aUUCGCACCUUUGUACAUAUAUAUAUAg -3'
miRNA:   3'- -AAGCGUGGGAGCAUGUAUAUAUAUAU- -5'
24710 3' -44.9 NC_005264.1 + 11160 1.06 0.049893
Target:  5'- aUUCGCACCCUCGUACAUAUAUAUAUAu -3'
miRNA:   3'- -AAGCGUGGGAGCAUGUAUAUAUAUAU- -5'
24710 3' -44.9 NC_005264.1 + 130187 1.06 0.049893
Target:  5'- aUUCGCACCCUCGUACAUAUAUAUAUAu -3'
miRNA:   3'- -AAGCGUGGGAGCAUGUAUAUAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.