miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24710 5' -44.5 NC_005264.1 + 79264 0.7 0.999674
Target:  5'- cGC-AUAUAcGUAgUGUACGGGGGcUGCa -3'
miRNA:   3'- -UGaUAUAUaUAU-ACAUGUCCCC-ACGc -5'
24710 5' -44.5 NC_005264.1 + 32900 0.7 0.999586
Target:  5'- gACUGUAUAUGc--GUucucgaucgcGCAGGGGUcGCGg -3'
miRNA:   3'- -UGAUAUAUAUauaCA----------UGUCCCCA-CGC- -5'
24710 5' -44.5 NC_005264.1 + 151677 0.77 0.960741
Target:  5'- -aUAUAUAUAUAUGUACGa-GGUGCGa -3'
miRNA:   3'- ugAUAUAUAUAUACAUGUccCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 18764 0.82 0.810461
Target:  5'- ---uUAUAUAUAUGUACAGaGGUGCGa -3'
miRNA:   3'- ugauAUAUAUAUACAUGUCcCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 32650 0.87 0.54168
Target:  5'- -aUAUAUAUAUAUGUACGaGGGUGCGa -3'
miRNA:   3'- ugAUAUAUAUAUACAUGUcCCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 144110 0.88 0.52018
Target:  5'- uACUAUAUAUAUAUGUACAaaGGUGCGa -3'
miRNA:   3'- -UGAUAUAUAUAUACAUGUccCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 32215 0.97 0.186073
Target:  5'- ---cUAUAUAUAUGUACAGGGGUGCGa -3'
miRNA:   3'- ugauAUAUAUAUACAUGUCCCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 151242 0.97 0.186073
Target:  5'- ---cUAUAUAUAUGUACAGGGGUGCGa -3'
miRNA:   3'- ugauAUAUAUAUACAUGUCCCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 130657 1.06 0.061255
Target:  5'- uAUUAUAUAUAUAUGUACAGGGGUGCGa -3'
miRNA:   3'- -UGAUAUAUAUAUACAUGUCCCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 11630 1.06 0.061255
Target:  5'- uAUUAUAUAUAUAUGUACAGGGGUGCGa -3'
miRNA:   3'- -UGAUAUAUAUAUACAUGUCCCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 11195 1.11 0.031013
Target:  5'- uACUAUAUAUAUAUGUACAGGGGUGCGa -3'
miRNA:   3'- -UGAUAUAUAUAUACAUGUCCCCACGC- -5'
24710 5' -44.5 NC_005264.1 + 130222 1.11 0.031013
Target:  5'- uACUAUAUAUAUAUGUACAGGGGUGCGa -3'
miRNA:   3'- -UGAUAUAUAUAUACAUGUCCCCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.