miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24711 5' -56.1 NC_005264.1 + 36103 0.66 0.919095
Target:  5'- cGCGGcUGGCAGauggguaCUCGCCgg-CCg- -3'
miRNA:   3'- -CGCC-ACCGUCaag----GAGCGGauaGGac -5'
24711 5' -56.1 NC_005264.1 + 61813 0.66 0.913338
Target:  5'- cGCGGgcaucgccgGGCAGUgccuggCUCGCCUGcgCCg- -3'
miRNA:   3'- -CGCCa--------CCGUCAag----GAGCGGAUa-GGac -5'
24711 5' -56.1 NC_005264.1 + 37090 0.66 0.894661
Target:  5'- cGCGGcGGCAGUUCCggggacggCGCC---CCa- -3'
miRNA:   3'- -CGCCaCCGUCAAGGa-------GCGGauaGGac -5'
24711 5' -56.1 NC_005264.1 + 133971 0.67 0.887976
Target:  5'- cGCGGUGGCG----UUCGCCgcgcgGUCCa- -3'
miRNA:   3'- -CGCCACCGUcaagGAGCGGa----UAGGac -5'
24711 5' -56.1 NC_005264.1 + 138171 0.68 0.843332
Target:  5'- -aGGUGGCGGcUUCCg-GCCUG-CCUc -3'
miRNA:   3'- cgCCACCGUC-AAGGagCGGAUaGGAc -5'
24711 5' -56.1 NC_005264.1 + 139064 0.68 0.800854
Target:  5'- cGCGGaGGCgccGGUUCCUUGCUgucgCCUa -3'
miRNA:   3'- -CGCCaCCG---UCAAGGAGCGGaua-GGAc -5'
24711 5' -56.1 NC_005264.1 + 124855 0.7 0.725487
Target:  5'- gGCGGUGGCcgccaCUCGCCUggCCg- -3'
miRNA:   3'- -CGCCACCGucaagGAGCGGAuaGGac -5'
24711 5' -56.1 NC_005264.1 + 5829 0.7 0.725487
Target:  5'- gGCGGUGGCcgccaCUCGCCUggCCg- -3'
miRNA:   3'- -CGCCACCGucaagGAGCGGAuaGGac -5'
24711 5' -56.1 NC_005264.1 + 33859 0.71 0.685596
Target:  5'- aCGGguccGGCAGUcCCUCGCCggcGUCuCUGc -3'
miRNA:   3'- cGCCa---CCGUCAaGGAGCGGa--UAG-GAC- -5'
24711 5' -56.1 NC_005264.1 + 152885 0.71 0.685596
Target:  5'- aCGGguccGGCAGUcCCUCGCCggcGUCuCUGc -3'
miRNA:   3'- cGCCa---CCGUCAaGGAGCGGa--UAG-GAC- -5'
24711 5' -56.1 NC_005264.1 + 95782 0.74 0.494107
Target:  5'- uUGGUGGCc-UUCCUCaggugggcggugaGCCUAUCCUGa -3'
miRNA:   3'- cGCCACCGucAAGGAG-------------CGGAUAGGAC- -5'
24711 5' -56.1 NC_005264.1 + 151497 0.74 0.485541
Target:  5'- -aGaUGGCAGUUCCUCGCCagaacgGUCCg- -3'
miRNA:   3'- cgCcACCGUCAAGGAGCGGa-----UAGGac -5'
24711 5' -56.1 NC_005264.1 + 32470 0.74 0.485541
Target:  5'- -aGaUGGCAGUUCCUCGCCagaacgGUCCg- -3'
miRNA:   3'- cgCcACCGUCAAGGAGCGGa-----UAGGac -5'
24711 5' -56.1 NC_005264.1 + 92493 0.76 0.387349
Target:  5'- uGCGGUGGCGGUgcgCCUgGCC-AUCUg- -3'
miRNA:   3'- -CGCCACCGUCAa--GGAgCGGaUAGGac -5'
24711 5' -56.1 NC_005264.1 + 3500 0.77 0.370944
Target:  5'- gGCGGggGGCAGgggaUCCUCGCC-GUCCg- -3'
miRNA:   3'- -CGCCa-CCGUCa---AGGAGCGGaUAGGac -5'
24711 5' -56.1 NC_005264.1 + 122527 0.77 0.370944
Target:  5'- gGCGGggGGCAGgggaUCCUCGCC-GUCCg- -3'
miRNA:   3'- -CGCCa-CCGUCa---AGGAGCGGaUAGGac -5'
24711 5' -56.1 NC_005264.1 + 130401 1.09 0.0029
Target:  5'- uGCGGUGGCAGUUCCUCGCCUAUCCUGc -3'
miRNA:   3'- -CGCCACCGUCAAGGAGCGGAUAGGAC- -5'
24711 5' -56.1 NC_005264.1 + 11374 1.09 0.0029
Target:  5'- uGCGGUGGCAGUUCCUCGCCUAUCCUGc -3'
miRNA:   3'- -CGCCACCGUCAAGGAGCGGAUAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.