Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 123100 | 0.67 | 0.593156 |
Target: 5'- cGCacgUGCGCUCCGGGGgcaucgaguacuacuUGGCCaaCGGGGg -3' miRNA: 3'- cCGa--GCGUGAGGCCCC---------------GUCGG--GCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 125114 | 0.67 | 0.560729 |
Target: 5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3' miRNA: 3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 126102 | 0.67 | 0.589321 |
Target: 5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3' miRNA: 3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 129327 | 0.66 | 0.656712 |
Target: 5'- aGCUCGC-CUaCCGGGcGCAGCgacgcgcaCUGAGc -3' miRNA: 3'- cCGAGCGuGA-GGCCC-CGUCG--------GGCUCc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 130807 | 1.1 | 0.000712 |
Target: 5'- uGGCUCGCACUCCGGGGCAGCCCGAGGc -3' miRNA: 3'- -CCGAGCGUGAGGCCCCGUCGGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 131977 | 0.68 | 0.532533 |
Target: 5'- gGGCUCGCgACgacaggCCGGuGGCGGUgggCCGAccGGc -3' miRNA: 3'- -CCGAGCG-UGa-----GGCC-CCGUCG---GGCU--CC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 132494 | 0.71 | 0.385529 |
Target: 5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3' miRNA: 3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 133711 | 0.67 | 0.569272 |
Target: 5'- cGGCcaCGCGCUCCucagguacgccucGGGG-GGUUCGAGGa -3' miRNA: 3'- -CCGa-GCGUGAGG-------------CCCCgUCGGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 134091 | 0.67 | 0.589321 |
Target: 5'- aGCUagaGCACgUCUGGGcGCAGgCUGAGa -3' miRNA: 3'- cCGAg--CGUG-AGGCCC-CGUCgGGCUCc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 138445 | 0.66 | 0.61816 |
Target: 5'- uGCUCGCgaucuaccucGCcgCCGGGGgAGCCgCGAa- -3' miRNA: 3'- cCGAGCG----------UGa-GGCCCCgUCGG-GCUcc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 150787 | 0.68 | 0.541879 |
Target: 5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3' miRNA: 3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 162692 | 0.66 | 0.61816 |
Target: 5'- cGGCgcgcUGCGCgCCGGcguuaaGGCGGCCgcCGGGGa -3' miRNA: 3'- -CCGa---GCGUGaGGCC------CCGUCGG--GCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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