miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24712 3' -62.9 NC_005264.1 + 96746 0.67 0.570223
Target:  5'- -aCUCGU-UUUCGGGGCAGCCCcccaGAGa -3'
miRNA:   3'- ccGAGCGuGAGGCCCCGUCGGG----CUCc -5'
24712 3' -62.9 NC_005264.1 + 91544 0.68 0.541879
Target:  5'- uGCUCGCGCauaUCGGGcGCGGCggggggcaCGAGGc -3'
miRNA:   3'- cCGAGCGUGa--GGCCC-CGUCGg-------GCUCC- -5'
24712 3' -62.9 NC_005264.1 + 89019 0.7 0.393426
Target:  5'- aGCUCGCGCaugUCGGGGCAcucGCCUGuGu -3'
miRNA:   3'- cCGAGCGUGa--GGCCCCGU---CGGGCuCc -5'
24712 3' -62.9 NC_005264.1 + 80568 0.66 0.617197
Target:  5'- cGGCggacccuUCGCGCUCCGGuGCcGCCUGucGc -3'
miRNA:   3'- -CCG-------AGCGUGAGGCCcCGuCGGGCucC- -5'
24712 3' -62.9 NC_005264.1 + 80339 0.66 0.6278
Target:  5'- uGGCUcCGCGCgggUCGGGuCGGUUgGAGGc -3'
miRNA:   3'- -CCGA-GCGUGa--GGCCCcGUCGGgCUCC- -5'
24712 3' -62.9 NC_005264.1 + 78686 0.69 0.468975
Target:  5'- cGGCgcgCGCGCUgcgaccacuucCCGGGGCucgcgagcuGCCgCGAGa -3'
miRNA:   3'- -CCGa--GCGUGA-----------GGCCCCGu--------CGG-GCUCc -5'
24712 3' -62.9 NC_005264.1 + 75482 0.66 0.637443
Target:  5'- uGGCcagUCGCGCguugagacuaCCGGGGCAcGCucgCCGAGc -3'
miRNA:   3'- -CCG---AGCGUGa---------GGCCCCGU-CG---GGCUCc -5'
24712 3' -62.9 NC_005264.1 + 68978 0.68 0.495774
Target:  5'- uGGCUCGCcaGCUuaGcGGGCcaguGGCCCGcGGc -3'
miRNA:   3'- -CCGAGCG--UGAggC-CCCG----UCGGGCuCC- -5'
24712 3' -62.9 NC_005264.1 + 66605 0.71 0.347648
Target:  5'- gGGCUgCGcCGCguugCCGGcgccgucGCGGCCCGAGGc -3'
miRNA:   3'- -CCGA-GC-GUGa---GGCCc------CGUCGGGCUCC- -5'
24712 3' -62.9 NC_005264.1 + 53284 0.67 0.598915
Target:  5'- uGGC-CGCGCgggcuUCgGGGGCAacgggaagucuGCCCaGGGGc -3'
miRNA:   3'- -CCGaGCGUG-----AGgCCCCGU-----------CGGG-CUCC- -5'
24712 3' -62.9 NC_005264.1 + 45128 0.66 0.665363
Target:  5'- uGCUCgGCACgcuaguaUCCGGGGCGgugacGCUCGAc- -3'
miRNA:   3'- cCGAG-CGUG-------AGGCCCCGU-----CGGGCUcc -5'
24712 3' -62.9 NC_005264.1 + 43666 0.66 0.61816
Target:  5'- cGGCgcgcUGCGCgCCGGcguuaaGGCGGCCgcCGGGGa -3'
miRNA:   3'- -CCGa---GCGUGaGGCC------CCGUCGG--GCUCC- -5'
24712 3' -62.9 NC_005264.1 + 41500 0.66 0.666323
Target:  5'- aGCUCGCcaACUCCuccuuaaggugcGGGaGCAGCCCc--- -3'
miRNA:   3'- cCGAGCG--UGAGG------------CCC-CGUCGGGcucc -5'
24712 3' -62.9 NC_005264.1 + 37914 0.67 0.597954
Target:  5'- gGGCUCGCguaauucGCUCCGuGGUcuuuaugauaGGCCaUGGGGg -3'
miRNA:   3'- -CCGAGCG-------UGAGGCcCCG----------UCGG-GCUCC- -5'
24712 3' -62.9 NC_005264.1 + 31761 0.68 0.541879
Target:  5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3'
miRNA:   3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5'
24712 3' -62.9 NC_005264.1 + 27411 0.7 0.417735
Target:  5'- aGGCgauaUCGCGCUCgGGGGCAugaUGAGGc -3'
miRNA:   3'- -CCG----AGCGUGAGgCCCCGUcggGCUCC- -5'
24712 3' -62.9 NC_005264.1 + 25640 0.68 0.504861
Target:  5'- gGGC-CGCGCUCCGcGuuuuccucaaucGGCAcGUCUGGGGg -3'
miRNA:   3'- -CCGaGCGUGAGGC-C------------CCGU-CGGGCUCC- -5'
24712 3' -62.9 NC_005264.1 + 24860 0.67 0.570223
Target:  5'- cGGCgaaGUcuuACcggagCCGGGGCGGCaCGAGGc -3'
miRNA:   3'- -CCGag-CG---UGa----GGCCCCGUCGgGCUCC- -5'
24712 3' -62.9 NC_005264.1 + 22878 0.8 0.096097
Target:  5'- gGGUUCGCAgcauCUCCGGGcagGGCCCGAGGg -3'
miRNA:   3'- -CCGAGCGU----GAGGCCCcg-UCGGGCUCC- -5'
24712 3' -62.9 NC_005264.1 + 22640 0.68 0.511265
Target:  5'- uGGCUCGCcagguauagcaaguGCUUUugGGGGCGGUcgUCGGGGu -3'
miRNA:   3'- -CCGAGCG--------------UGAGG--CCCCGUCG--GGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.