Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 80339 | 0.66 | 0.6278 |
Target: 5'- uGGCUcCGCGCgggUCGGGuCGGUUgGAGGc -3' miRNA: 3'- -CCGA-GCGUGa--GGCCCcGUCGGgCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 122089 | 0.66 | 0.656712 |
Target: 5'- uGGCaCGCugUCUcgccgcgacuGGcGGCGGC-CGAGGa -3' miRNA: 3'- -CCGaGCGugAGG----------CC-CCGUCGgGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 98093 | 0.66 | 0.666323 |
Target: 5'- cGGC-CGC-C-CCGGGGUua-CCGGGGu -3' miRNA: 3'- -CCGaGCGuGaGGCCCCGucgGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 24860 | 0.67 | 0.570223 |
Target: 5'- cGGCgaaGUcuuACcggagCCGGGGCGGCaCGAGGc -3' miRNA: 3'- -CCGag-CG---UGa----GGCCCCGUCGgGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 125114 | 0.67 | 0.560729 |
Target: 5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3' miRNA: 3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 123100 | 0.67 | 0.593156 |
Target: 5'- cGCacgUGCGCUCCGGGGgcaucgaguacuacuUGGCCaaCGGGGg -3' miRNA: 3'- cCGa--GCGUGAGGCCCC---------------GUCGG--GCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 11781 | 1.1 | 0.000712 |
Target: 5'- uGGCUCGCACUCCGGGGCAGCCCGAGGc -3' miRNA: 3'- -CCGAGCGUGAGGCCCCGUCGGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 22878 | 0.8 | 0.096097 |
Target: 5'- gGGUUCGCAgcauCUCCGGGcagGGCCCGAGGg -3' miRNA: 3'- -CCGAGCGU----GAGGCCCcg-UCGGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 7075 | 0.67 | 0.589321 |
Target: 5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3' miRNA: 3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 6087 | 0.67 | 0.560729 |
Target: 5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3' miRNA: 3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 3362 | 0.67 | 0.560729 |
Target: 5'- cGCUC-CGCUCCgucugGGGGCGGC--GAGGg -3' miRNA: 3'- cCGAGcGUGAGG-----CCCCGUCGggCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 120273 | 0.67 | 0.560729 |
Target: 5'- uGGCUCGC-CUCCGGcaaGGCuGCCgGc-- -3' miRNA: 3'- -CCGAGCGuGAGGCC---CCGuCGGgCucc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 91544 | 0.68 | 0.541879 |
Target: 5'- uGCUCGCGCauaUCGGGcGCGGCggggggcaCGAGGc -3' miRNA: 3'- cCGAGCGUGa--GGCCC-CGUCGg-------GCUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 31761 | 0.68 | 0.541879 |
Target: 5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3' miRNA: 3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 78686 | 0.69 | 0.468975 |
Target: 5'- cGGCgcgCGCGCUgcgaccacuucCCGGGGCucgcgagcuGCCgCGAGa -3' miRNA: 3'- -CCGa--GCGUGA-----------GGCCCCGu--------CGG-GCUCc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 101748 | 0.7 | 0.409531 |
Target: 5'- uGGCggCGCGCUCCccaaaggacguGGuGGCGGCCCuGAacGGa -3' miRNA: 3'- -CCGa-GCGUGAGG-----------CC-CCGUCGGG-CU--CC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 89019 | 0.7 | 0.393426 |
Target: 5'- aGCUCGCGCaugUCGGGGCAcucGCCUGuGu -3' miRNA: 3'- cCGAGCGUGa--GGCCCCGU---CGGGCuCc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 13467 | 0.71 | 0.385529 |
Target: 5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3' miRNA: 3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 100471 | 0.71 | 0.377738 |
Target: 5'- aGUUCGCugUCgCGGcGGCcagGGCCCugGAGGg -3' miRNA: 3'- cCGAGCGugAG-GCC-CCG---UCGGG--CUCC- -5' |
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24712 | 3' | -62.9 | NC_005264.1 | + | 941 | 0.73 | 0.280119 |
Target: 5'- gGGCUCGU----CGGGGgGGCUCGAGGa -3' miRNA: 3'- -CCGAGCGugagGCCCCgUCGGGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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