Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 123100 | 0.67 | 0.593156 |
Target: 5'- cGCacgUGCGCUCCGGGGgcaucgaguacuacuUGGCCaaCGGGGg -3' miRNA: 3'- cCGa--GCGUGAGGCCCC---------------GUCGG--GCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 7075 | 0.67 | 0.589321 |
Target: 5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3' miRNA: 3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 134091 | 0.67 | 0.589321 |
Target: 5'- aGCUagaGCACgUCUGGGcGCAGgCUGAGa -3' miRNA: 3'- cCGAg--CGUG-AGGCCC-CGUCgGGCUCc -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 96746 | 0.67 | 0.570223 |
Target: 5'- -aCUCGU-UUUCGGGGCAGCCCcccaGAGa -3' miRNA: 3'- ccGAGCGuGAGGCCCCGUCGGG----CUCc -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 133711 | 0.67 | 0.569272 |
Target: 5'- cGGCcaCGCGCUCCucagguacgccucGGGG-GGUUCGAGGa -3' miRNA: 3'- -CCGa-GCGUGAGG-------------CCCCgUCGGGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 6087 | 0.67 | 0.560729 |
Target: 5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3' miRNA: 3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 3362 | 0.67 | 0.560729 |
Target: 5'- cGCUC-CGCUCCgucugGGGGCGGC--GAGGg -3' miRNA: 3'- cCGAGcGUGAGG-----CCCCGUCGggCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 150787 | 0.68 | 0.541879 |
Target: 5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3' miRNA: 3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 122389 | 0.67 | 0.560729 |
Target: 5'- cGCUC-CGCUCCgucugGGGGCGGC--GAGGg -3' miRNA: 3'- cCGAGcGUGAGG-----CCCCGUCGggCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 125114 | 0.67 | 0.560729 |
Target: 5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3' miRNA: 3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 24860 | 0.67 | 0.570223 |
Target: 5'- cGGCgaaGUcuuACcggagCCGGGGCGGCaCGAGGc -3' miRNA: 3'- -CCGag-CG---UGa----GGCCCCGUCGgGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 126102 | 0.67 | 0.589321 |
Target: 5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3' miRNA: 3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 9551 | 0.69 | 0.477827 |
Target: 5'- cGCUCGCAg-CCGGuGGCGGCuaGcAGGu -3' miRNA: 3'- cCGAGCGUgaGGCC-CCGUCGggC-UCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 16544 | 0.69 | 0.468975 |
Target: 5'- cGCUUGCGCguauuucagcgCgGuGGGCGGCgCCGGGGc -3' miRNA: 3'- cCGAGCGUGa----------GgC-CCCGUCG-GGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 27411 | 0.7 | 0.417735 |
Target: 5'- aGGCgauaUCGCGCUCgGGGGCAugaUGAGGc -3' miRNA: 3'- -CCG----AGCGUGAGgCCCCGUcggGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 132494 | 0.71 | 0.385529 |
Target: 5'- gGGCUCcuGCggggACUCgGGGGaCAGCUCGGGa -3' miRNA: 3'- -CCGAG--CG----UGAGgCCCC-GUCGGGCUCc -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 112331 | 0.71 | 0.370053 |
Target: 5'- aGCUCGUguucgGCUUCGaGGGCAGCUuUGGGGa -3' miRNA: 3'- cCGAGCG-----UGAGGC-CCCGUCGG-GCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 66605 | 0.71 | 0.347648 |
Target: 5'- gGGCUgCGcCGCguugCCGGcgccgucGCGGCCCGAGGc -3' miRNA: 3'- -CCGA-GC-GUGa---GGCCc------CGUCGGGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 119967 | 0.73 | 0.280119 |
Target: 5'- gGGCUCGU----CGGGGgGGCUCGAGGa -3' miRNA: 3'- -CCGAGCGugagGCCCCgUCGGGCUCC- -5' |
|||||||
24712 | 3' | -62.9 | NC_005264.1 | + | 98093 | 0.66 | 0.666323 |
Target: 5'- cGGC-CGC-C-CCGGGGUua-CCGGGGu -3' miRNA: 3'- -CCGaGCGuGaGGCCCCGucgGGCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home