Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 104841 | 0.66 | 0.71689 |
Target: 5'- cGCCgGGGCCGCuGAGccacGGCCGccgcgcgGGGAc-- -3' miRNA: 3'- -CGG-CUCGGCG-CUC----CCGGCa------CCCUuuu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 156898 | 0.66 | 0.71689 |
Target: 5'- gGCaacGCCGCGGguucGGGCCGUGGuuAGAu -3' miRNA: 3'- -CGgcuCGGCGCU----CCCGGCACCcuUUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 152939 | 0.66 | 0.71689 |
Target: 5'- cGCCGccuuucuGCCGCcAGGGC--UGGGAAGg -3' miRNA: 3'- -CGGCu------CGGCGcUCCCGgcACCCUUUu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 113513 | 0.66 | 0.687711 |
Target: 5'- gGCCGAG-CGCGAacaGCCGcGGGAGGu -3' miRNA: 3'- -CGGCUCgGCGCUcc-CGGCaCCCUUUu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 43489 | 0.66 | 0.677887 |
Target: 5'- cGCCauuGCCGCGAuuugggggguGGGagGUGGGAGAc -3' miRNA: 3'- -CGGcu-CGGCGCU----------CCCggCACCCUUUu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 162516 | 0.66 | 0.677887 |
Target: 5'- cGCCauuGCCGCGAuuugggggguGGGagGUGGGAGAc -3' miRNA: 3'- -CGGcu-CGGCGCU----------CCCggCACCCUUUu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 116411 | 0.67 | 0.668027 |
Target: 5'- cGCUGAGcCCGCGGcaGGUCGcUGGGGGc- -3' miRNA: 3'- -CGGCUC-GGCGCUc-CCGGC-ACCCUUuu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 21360 | 0.67 | 0.668027 |
Target: 5'- cCCGGGCCGCcucGGCCG-GuGGAAAGa -3' miRNA: 3'- cGGCUCGGCGcucCCGGCaC-CCUUUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 122638 | 0.67 | 0.668027 |
Target: 5'- cGCCGcggggGGCCGCGAGGGC---GGGc--- -3' miRNA: 3'- -CGGC-----UCGGCGCUCCCGgcaCCCuuuu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 3611 | 0.67 | 0.668027 |
Target: 5'- cGCCGcggggGGCCGCGAGGGC---GGGc--- -3' miRNA: 3'- -CGGC-----UCGGCGCUCCCGgcaCCCuuuu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 43173 | 0.67 | 0.662099 |
Target: 5'- cGCgUGAGCCucuaucgcgcugccuGCGAcgcGGGCCGgcgGGGggGGg -3' miRNA: 3'- -CG-GCUCGG---------------CGCU---CCCGGCa--CCCuuUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 162200 | 0.67 | 0.662099 |
Target: 5'- cGCgUGAGCCucuaucgcgcugccuGCGAcgcGGGCCGgcgGGGggGGg -3' miRNA: 3'- -CG-GCUCGG---------------CGCU---CCCGGCa--CCCuuUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 70991 | 0.67 | 0.658141 |
Target: 5'- cGCCcGGUCGCaGGGGCugCGUGGGcAGGAu -3' miRNA: 3'- -CGGcUCGGCGcUCCCG--GCACCC-UUUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 65455 | 0.67 | 0.648235 |
Target: 5'- cGCuCGGGCCcUGGGGGCUuuUGGGGGAu -3' miRNA: 3'- -CG-GCUCGGcGCUCCCGGc-ACCCUUUu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 139321 | 0.67 | 0.638317 |
Target: 5'- cUCGGGUCGacAGGGCCGUacggGGGAGGAa -3' miRNA: 3'- cGGCUCGGCgcUCCCGGCA----CCCUUUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 107609 | 0.67 | 0.638317 |
Target: 5'- uGCaUGAcauGCUGCGccuGGGCCGcGGGAGAAu -3' miRNA: 3'- -CG-GCU---CGGCGCu--CCCGGCaCCCUUUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 101350 | 0.67 | 0.628394 |
Target: 5'- aGCCGAGaCCGCG-GGGCgCGUcGGc--- -3' miRNA: 3'- -CGGCUC-GGCGCuCCCG-GCAcCCuuuu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 130979 | 0.67 | 0.618474 |
Target: 5'- cGCCGA-CCGCGAGGcGCUGgaagauuucagGGGGu-- -3' miRNA: 3'- -CGGCUcGGCGCUCC-CGGCa----------CCCUuuu -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 41333 | 0.68 | 0.605594 |
Target: 5'- cGCCGAccaucgucgaagcaGCCGCGAaGGCCcagcuccGGGAAGAa -3' miRNA: 3'- -CGGCU--------------CGGCGCUcCCGGca-----CCCUUUU- -5' |
|||||||
24713 | 3' | -60.8 | NC_005264.1 | + | 160360 | 0.68 | 0.605594 |
Target: 5'- cGCCGAccaucgucgaagcaGCCGCGAaGGCCcagcuccGGGAAGAa -3' miRNA: 3'- -CGGCU--------------CGGCGCUcCCGGca-----CCCUUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home