miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24713 5' -57.3 NC_005264.1 + 130946 1.08 0.002851
Target:  5'- aGAUUUUCCCACGGUCGCCGCUGGGGUg -3'
miRNA:   3'- -CUAAAAGGGUGCCAGCGGCGACCCCA- -5'
24713 5' -57.3 NC_005264.1 + 11920 1.08 0.002851
Target:  5'- aGAUUUUCCCACGGUCGCCGCUGGGGUg -3'
miRNA:   3'- -CUAAAAGGGUGCCAGCGGCGACCCCA- -5'
24713 5' -57.3 NC_005264.1 + 37212 0.72 0.557189
Target:  5'- --aUUUCCCACGcGcUCGCCGUugaccugucggccccUGGGGg -3'
miRNA:   3'- cuaAAAGGGUGC-C-AGCGGCG---------------ACCCCa -5'
24713 5' -57.3 NC_005264.1 + 156239 0.72 0.557189
Target:  5'- --aUUUCCCACGcGcUCGCCGUugaccugucggccccUGGGGg -3'
miRNA:   3'- cuaAAAGGGUGC-C-AGCGGCG---------------ACCCCa -5'
24713 5' -57.3 NC_005264.1 + 116417 0.71 0.583157
Target:  5'- -----gCCCGCGGcagGUCGCUGGGGg -3'
miRNA:   3'- cuaaaaGGGUGCCag-CGGCGACCCCa -5'
24713 5' -57.3 NC_005264.1 + 52948 0.71 0.613402
Target:  5'- -----gCCCGCGGcgcauugCGCCGC-GGGGUa -3'
miRNA:   3'- cuaaaaGGGUGCCa------GCGGCGaCCCCA- -5'
24713 5' -57.3 NC_005264.1 + 160939 0.71 0.623521
Target:  5'- ----aUCCCGCaGUCGCgGC-GGGGUc -3'
miRNA:   3'- cuaaaAGGGUGcCAGCGgCGaCCCCA- -5'
24713 5' -57.3 NC_005264.1 + 104856 0.69 0.694092
Target:  5'- ------gCCACGGcCGCCGCgcGGGGa -3'
miRNA:   3'- cuaaaagGGUGCCaGCGGCGa-CCCCa -5'
24713 5' -57.3 NC_005264.1 + 160521 0.69 0.733487
Target:  5'- ---aUUCCuUACG--CGCCGCUGGGGg -3'
miRNA:   3'- cuaaAAGG-GUGCcaGCGGCGACCCCa -5'
24713 5' -57.3 NC_005264.1 + 125460 0.68 0.752703
Target:  5'- ----cUCUCGCGGcggCGUCGCUGGcGGa -3'
miRNA:   3'- cuaaaAGGGUGCCa--GCGGCGACC-CCa -5'
24713 5' -57.3 NC_005264.1 + 6433 0.68 0.752703
Target:  5'- ----cUCUCGCGGcggCGUCGCUGGcGGa -3'
miRNA:   3'- cuaaaAGGGUGCCa--GCGGCGACC-CCa -5'
24713 5' -57.3 NC_005264.1 + 20496 0.67 0.814509
Target:  5'- -cUUUUgCCUGCGGUCGCUGCgccgagaagccaGGGGc -3'
miRNA:   3'- cuAAAA-GGGUGCCAGCGGCGa-----------CCCCa -5'
24713 5' -57.3 NC_005264.1 + 31924 0.67 0.816226
Target:  5'- cAUUUUCCCACGGccUCGCgGCUcGGc- -3'
miRNA:   3'- cUAAAAGGGUGCC--AGCGgCGAcCCca -5'
24713 5' -57.3 NC_005264.1 + 119930 0.67 0.816226
Target:  5'- -----gCCC-CGuGUCgcggGCCGCUGGGGg -3'
miRNA:   3'- cuaaaaGGGuGC-CAG----CGGCGACCCCa -5'
24713 5' -57.3 NC_005264.1 + 904 0.67 0.816226
Target:  5'- -----gCCC-CGuGUCgcggGCCGCUGGGGg -3'
miRNA:   3'- cuaaaaGGGuGC-CAG----CGGCGACCCCa -5'
24713 5' -57.3 NC_005264.1 + 156616 0.67 0.833027
Target:  5'- ----gUCUCGCGG-CgGCCGCggcgGGGGg -3'
miRNA:   3'- cuaaaAGGGUGCCaG-CGGCGa---CCCCa -5'
24713 5' -57.3 NC_005264.1 + 37589 0.67 0.833027
Target:  5'- ----gUCUCGCGG-CgGCCGCggcgGGGGg -3'
miRNA:   3'- cuaaaAGGGUGCCaG-CGGCGa---CCCCa -5'
24713 5' -57.3 NC_005264.1 + 74112 0.67 0.841162
Target:  5'- ----gUCgaCGCuGUCGCgGCUGGGGUc -3'
miRNA:   3'- cuaaaAGg-GUGcCAGCGgCGACCCCA- -5'
24713 5' -57.3 NC_005264.1 + 150950 0.66 0.849112
Target:  5'- cAUUUUCCCACGGcccUCGCgGCUcGGc- -3'
miRNA:   3'- cUAAAAGGGUGCC---AGCGgCGAcCCca -5'
24713 5' -57.3 NC_005264.1 + 30739 0.66 0.856869
Target:  5'- ---cUUCCCGCGcaaagaGCCGCUcaGGGGa -3'
miRNA:   3'- cuaaAAGGGUGCcag---CGGCGA--CCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.