miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24716 3' -54.9 NC_005264.1 + 42407 0.66 0.95483
Target:  5'- cCCCGCUUauuucCCCCUcuguccucgccACUCCcGGaUCCg -3'
miRNA:   3'- aGGGUGAAac---GGGGA-----------UGAGG-CCaAGG- -5'
24716 3' -54.9 NC_005264.1 + 161434 0.66 0.95483
Target:  5'- cCCCGCUUauuucCCCCUcuguccucgccACUCCcGGaUCCg -3'
miRNA:   3'- aGGGUGAAac---GGGGA-----------UGAGG-CCaAGG- -5'
24716 3' -54.9 NC_005264.1 + 8217 0.66 0.95483
Target:  5'- cCCCGCg--GCCgCUGgUCCGaGUacgCCa -3'
miRNA:   3'- aGGGUGaaaCGGgGAUgAGGC-CAa--GG- -5'
24716 3' -54.9 NC_005264.1 + 824 0.66 0.95483
Target:  5'- gCCgGCUUUaGCCUCUGuCUCUGGcgugCCc -3'
miRNA:   3'- aGGgUGAAA-CGGGGAU-GAGGCCaa--GG- -5'
24716 3' -54.9 NC_005264.1 + 30195 0.66 0.95083
Target:  5'- -aCCGCc--GCCCCUGC-CCGcGUcCCg -3'
miRNA:   3'- agGGUGaaaCGGGGAUGaGGC-CAaGG- -5'
24716 3' -54.9 NC_005264.1 + 149222 0.66 0.95083
Target:  5'- -aCCGCc--GCCCCUGC-CCGcGUcCCg -3'
miRNA:   3'- agGGUGaaaCGGGGAUGaGGC-CAaGG- -5'
24716 3' -54.9 NC_005264.1 + 761 0.66 0.9466
Target:  5'- cUUCgGCggaGCCCCUACgcgacaCGGUUCUu -3'
miRNA:   3'- -AGGgUGaaaCGGGGAUGag----GCCAAGG- -5'
24716 3' -54.9 NC_005264.1 + 53731 0.66 0.9466
Target:  5'- gUCCguCUcgucgUGCCCgU-CUCCGGcgCCg -3'
miRNA:   3'- -AGGguGAa----ACGGGgAuGAGGCCaaGG- -5'
24716 3' -54.9 NC_005264.1 + 113905 0.66 0.942136
Target:  5'- gCCCGCacaagUGCCCaucgggcgagACUCUGGccUUCCa -3'
miRNA:   3'- aGGGUGaa---ACGGGga--------UGAGGCC--AAGG- -5'
24716 3' -54.9 NC_005264.1 + 42659 0.66 0.937438
Target:  5'- aUCCUugag-GCCCUcGCUUCGuGUUCCa -3'
miRNA:   3'- -AGGGugaaaCGGGGaUGAGGC-CAAGG- -5'
24716 3' -54.9 NC_005264.1 + 39991 0.67 0.932502
Target:  5'- cUCCUGCg--GCCCC-GC-CCGGgcCCg -3'
miRNA:   3'- -AGGGUGaaaCGGGGaUGaGGCCaaGG- -5'
24716 3' -54.9 NC_005264.1 + 127293 0.67 0.932502
Target:  5'- cCCCGCagUGCCCCacUACgCCcuauaGGUUUCg -3'
miRNA:   3'- aGGGUGaaACGGGG--AUGaGG-----CCAAGG- -5'
24716 3' -54.9 NC_005264.1 + 159018 0.67 0.932502
Target:  5'- cUCCUGCg--GCCCC-GC-CCGGgcCCg -3'
miRNA:   3'- -AGGGUGaaaCGGGGaUGaGGCCaaGG- -5'
24716 3' -54.9 NC_005264.1 + 128849 0.67 0.910379
Target:  5'- cUCCgGCgucUUGCCC--GCUCUGGUcgCCa -3'
miRNA:   3'- -AGGgUGa--AACGGGgaUGAGGCCAa-GG- -5'
24716 3' -54.9 NC_005264.1 + 35533 0.67 0.910379
Target:  5'- gCCCACgg-GCgCCUugUUgGcGUUCCu -3'
miRNA:   3'- aGGGUGaaaCGgGGAugAGgC-CAAGG- -5'
24716 3' -54.9 NC_005264.1 + 154560 0.67 0.910379
Target:  5'- gCCCACgg-GCgCCUugUUgGcGUUCCu -3'
miRNA:   3'- aGGGUGaaaCGgGGAugAGgC-CAAGG- -5'
24716 3' -54.9 NC_005264.1 + 148901 0.67 0.904256
Target:  5'- cUCUCGCgcuaGCcaaagaCCCUAUUCCGGaUCCa -3'
miRNA:   3'- -AGGGUGaaa-CG------GGGAUGAGGCCaAGG- -5'
24716 3' -54.9 NC_005264.1 + 148794 0.68 0.891313
Target:  5'- uUCCCACccgGCCCCgccACgUCCGGa--- -3'
miRNA:   3'- -AGGGUGaaaCGGGGa--UG-AGGCCaagg -5'
24716 3' -54.9 NC_005264.1 + 79133 0.69 0.847191
Target:  5'- gUgCGC-UUGCCCCUuCUCCguGGUUCUg -3'
miRNA:   3'- aGgGUGaAACGGGGAuGAGG--CCAAGG- -5'
24716 3' -54.9 NC_005264.1 + 149037 0.69 0.822424
Target:  5'- gUCCCACagc-CCCCUGC-CCgGGUUCa -3'
miRNA:   3'- -AGGGUGaaacGGGGAUGaGG-CCAAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.