miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24716 5' -49.6 NC_005264.1 + 93026 0.66 0.999
Target:  5'- cCGGcGGCGUcGUCcGCGCCgaaUGCGUGc -3'
miRNA:   3'- cGCCuUCGUA-UAGuUGCGG---AUGCACc -5'
24716 5' -49.6 NC_005264.1 + 131475 0.66 0.999
Target:  5'- uGCGGucuaaaggcccGGCAggcGUCAGCGaguuCUUGCGUGGc -3'
miRNA:   3'- -CGCCu----------UCGUa--UAGUUGC----GGAUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 12448 0.66 0.999
Target:  5'- uGCGGucuaaaggcccGGCAggcGUCAGCGaguuCUUGCGUGGc -3'
miRNA:   3'- -CGCCu----------UCGUa--UAGUUGC----GGAUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 110393 0.66 0.999
Target:  5'- gGCGGgcGCAUGcUGACGCUgcucaaaaGCGUcGGg -3'
miRNA:   3'- -CGCCuuCGUAUaGUUGCGGa-------UGCA-CC- -5'
24716 5' -49.6 NC_005264.1 + 52852 0.66 0.998939
Target:  5'- cGCGGGAGCugcgcgCAuacgacgugcacacGCGCgagcgaggggCUGCGUGGu -3'
miRNA:   3'- -CGCCUUCGuaua--GU--------------UGCG----------GAUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 98487 0.66 0.998784
Target:  5'- cGCGaGGGCAUcuccUCAGCGCUacaGUGGg -3'
miRNA:   3'- -CGCcUUCGUAu---AGUUGCGGaugCACC- -5'
24716 5' -49.6 NC_005264.1 + 79308 0.66 0.998784
Target:  5'- uGCGGGGuCAUGUCGcuCGCCgcauuUGCGUGc -3'
miRNA:   3'- -CGCCUUcGUAUAGUu-GCGG-----AUGCACc -5'
24716 5' -49.6 NC_005264.1 + 101604 0.66 0.998784
Target:  5'- aGCuGGAGCGcgcCAuCGCCaACGUGGa -3'
miRNA:   3'- -CGcCUUCGUauaGUuGCGGaUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 109837 0.66 0.998784
Target:  5'- uGCGGAGGCAgaggAUUuugcccgcgAGCGCgaGCuaGUGGa -3'
miRNA:   3'- -CGCCUUCGUa---UAG---------UUGCGgaUG--CACC- -5'
24716 5' -49.6 NC_005264.1 + 146824 0.66 0.998784
Target:  5'- aCGGAGGCGcggcgGUCGuCGCCUGCc--- -3'
miRNA:   3'- cGCCUUCGUa----UAGUuGCGGAUGcacc -5'
24716 5' -49.6 NC_005264.1 + 29288 0.66 0.998784
Target:  5'- cGCGGgcGCGUGccUCGacguuuucuuuGCGCCaUGCaUGGa -3'
miRNA:   3'- -CGCCuuCGUAU--AGU-----------UGCGG-AUGcACC- -5'
24716 5' -49.6 NC_005264.1 + 59829 0.66 0.99853
Target:  5'- -gGGucGCGUAcgcCAGCGCgcaaUACGUGGu -3'
miRNA:   3'- cgCCuuCGUAUa--GUUGCGg---AUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 153649 0.66 0.99853
Target:  5'- uGUGGggGCGUGUCuGCGUC-ACa--- -3'
miRNA:   3'- -CGCCuuCGUAUAGuUGCGGaUGcacc -5'
24716 5' -49.6 NC_005264.1 + 19116 0.66 0.99853
Target:  5'- cGCGGAgacgAGCAcuaCGAUGgggCUACGUGGa -3'
miRNA:   3'- -CGCCU----UCGUauaGUUGCg--GAUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 32818 0.66 0.99853
Target:  5'- cGCGGAAGCcug-CGGCGCCguucCGg-- -3'
miRNA:   3'- -CGCCUUCGuauaGUUGCGGau--GCacc -5'
24716 5' -49.6 NC_005264.1 + 34622 0.66 0.99853
Target:  5'- uGUGGggGCGUGUCuGCGUC-ACa--- -3'
miRNA:   3'- -CGCCuuCGUAUAGuUGCGGaUGcacc -5'
24716 5' -49.6 NC_005264.1 + 107261 0.66 0.99853
Target:  5'- aCGGgcGCAUGUC--CGCUgcaGUGGg -3'
miRNA:   3'- cGCCuuCGUAUAGuuGCGGaugCACC- -5'
24716 5' -49.6 NC_005264.1 + 57139 0.66 0.99853
Target:  5'- cGCGGAcguaGGCuggucUGUCuuuGCGCCgGCG-GGa -3'
miRNA:   3'- -CGCCU----UCGu----AUAGu--UGCGGaUGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 154808 0.66 0.998232
Target:  5'- gGCGGAgGGCGcggUGGCGCCguCGUGGc -3'
miRNA:   3'- -CGCCU-UCGUauaGUUGCGGauGCACC- -5'
24716 5' -49.6 NC_005264.1 + 35782 0.66 0.998232
Target:  5'- gGCGGAgGGCGcggUGGCGCCguCGUGGc -3'
miRNA:   3'- -CGCCU-UCGUauaGUUGCGGauGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.