miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24716 5' -49.6 NC_005264.1 + 87709 0.66 0.998232
Target:  5'- cGUGGAuGC----CGAgGCCUugGUGGc -3'
miRNA:   3'- -CGCCUuCGuauaGUUgCGGAugCACC- -5'
24716 5' -49.6 NC_005264.1 + 35782 0.66 0.998232
Target:  5'- gGCGGAgGGCGcggUGGCGCCguCGUGGc -3'
miRNA:   3'- -CGCCU-UCGUauaGUUGCGGauGCACC- -5'
24716 5' -49.6 NC_005264.1 + 94600 0.66 0.998232
Target:  5'- cGCGGcgcGGGCAUGgcUUGGCGgUgcgGCGUGGa -3'
miRNA:   3'- -CGCC---UUCGUAU--AGUUGCgGa--UGCACC- -5'
24716 5' -49.6 NC_005264.1 + 88603 0.66 0.997885
Target:  5'- cUGGAGcGCGgc-CAGCGCgCUACGUGc -3'
miRNA:   3'- cGCCUU-CGUauaGUUGCG-GAUGCACc -5'
24716 5' -49.6 NC_005264.1 + 137831 0.66 0.997885
Target:  5'- -aGGAgaGGCAUG-CAGCGCCUGagcCGcagGGg -3'
miRNA:   3'- cgCCU--UCGUAUaGUUGCGGAU---GCa--CC- -5'
24716 5' -49.6 NC_005264.1 + 42992 0.66 0.997885
Target:  5'- cGUcGAGGCAUAUgCAgcACGgCUGCGUGu -3'
miRNA:   3'- -CGcCUUCGUAUA-GU--UGCgGAUGCACc -5'
24716 5' -49.6 NC_005264.1 + 143030 0.67 0.997483
Target:  5'- cGCGGGAGUuuuacGUCGACGCauuucuUGCG-GGc -3'
miRNA:   3'- -CGCCUUCGua---UAGUUGCGg-----AUGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 105582 0.67 0.997483
Target:  5'- cGCGGGcuagGGC---UCgAGCGCCUcaagaccgugguGCGUGGg -3'
miRNA:   3'- -CGCCU----UCGuauAG-UUGCGGA------------UGCACC- -5'
24716 5' -49.6 NC_005264.1 + 48245 0.67 0.997483
Target:  5'- uGCGGcAAGCGUGUgGcggugcACGUCUAUG-GGc -3'
miRNA:   3'- -CGCC-UUCGUAUAgU------UGCGGAUGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 107596 0.67 0.997483
Target:  5'- gGCGGucGCAUGUUGcaugacaugcuGCGCCUgggccGCG-GGa -3'
miRNA:   3'- -CGCCuuCGUAUAGU-----------UGCGGA-----UGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 59257 0.67 0.997483
Target:  5'- aGCGGcuAGCAUcAUCAGCGUCgcCGUa- -3'
miRNA:   3'- -CGCCu-UCGUA-UAGUUGCGGauGCAcc -5'
24716 5' -49.6 NC_005264.1 + 66547 0.67 0.997483
Target:  5'- cGCGGAcGCcgAggcgCAcgagcGCGUCUACGaUGGa -3'
miRNA:   3'- -CGCCUuCGuaUa---GU-----UGCGGAUGC-ACC- -5'
24716 5' -49.6 NC_005264.1 + 107060 0.67 0.997019
Target:  5'- cGCGG-AGCGUGguuaagcagacUCAGCGCgaGCGUu- -3'
miRNA:   3'- -CGCCuUCGUAU-----------AGUUGCGgaUGCAcc -5'
24716 5' -49.6 NC_005264.1 + 130541 0.67 0.997019
Target:  5'- uGCGcGAAGCGUcgCGGCGCgugugCUACGcgcaGGu -3'
miRNA:   3'- -CGC-CUUCGUAuaGUUGCG-----GAUGCa---CC- -5'
24716 5' -49.6 NC_005264.1 + 150126 0.67 0.997019
Target:  5'- gGCGG-AGCAUGUCAGaggGCCcGCGc-- -3'
miRNA:   3'- -CGCCuUCGUAUAGUUg--CGGaUGCacc -5'
24716 5' -49.6 NC_005264.1 + 154491 0.67 0.996486
Target:  5'- -aGGAAGCcacgGUUAAgGUCUGCG-GGg -3'
miRNA:   3'- cgCCUUCGua--UAGUUgCGGAUGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 6990 0.67 0.995878
Target:  5'- cGCGGGGuugucccuGCGgg-CGGCGCCaACGUGa -3'
miRNA:   3'- -CGCCUU--------CGUauaGUUGCGGaUGCACc -5'
24716 5' -49.6 NC_005264.1 + 45547 0.67 0.995878
Target:  5'- cGCGGAgagcGGCAUcgCGcACGCgUACGauaggUGGc -3'
miRNA:   3'- -CGCCU----UCGUAuaGU-UGCGgAUGC-----ACC- -5'
24716 5' -49.6 NC_005264.1 + 18149 0.67 0.995878
Target:  5'- cGUGGucGCAacugucgucGUCGGCGCCacuguCGUGGg -3'
miRNA:   3'- -CGCCuuCGUa--------UAGUUGCGGau---GCACC- -5'
24716 5' -49.6 NC_005264.1 + 121542 0.67 0.995878
Target:  5'- uGCGGGccgauAGCGUggaaGUCGACGCggGCG-GGc -3'
miRNA:   3'- -CGCCU-----UCGUA----UAGUUGCGgaUGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.