miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24716 5' -49.6 NC_005264.1 + 133044 1.13 0.008379
Target:  5'- gGCGGAAGCAUAUCAACGCCUACGUGGc -3'
miRNA:   3'- -CGCCUUCGUAUAGUUGCGGAUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 42992 0.66 0.997885
Target:  5'- cGUcGAGGCAUAUgCAgcACGgCUGCGUGu -3'
miRNA:   3'- -CGcCUUCGUAUA-GU--UGCgGAUGCACc -5'
24716 5' -49.6 NC_005264.1 + 145921 0.66 0.998232
Target:  5'- cCGGcGGCGgGUCAGCGCggGCaUGGg -3'
miRNA:   3'- cGCCuUCGUaUAGUUGCGgaUGcACC- -5'
24716 5' -49.6 NC_005264.1 + 131475 0.66 0.999
Target:  5'- uGCGGucuaaaggcccGGCAggcGUCAGCGaguuCUUGCGUGGc -3'
miRNA:   3'- -CGCCu----------UCGUa--UAGUUGC----GGAUGCACC- -5'
24716 5' -49.6 NC_005264.1 + 93011 0.7 0.979606
Target:  5'- aGCGGggGCA-GUCAAgGCa---GUGGc -3'
miRNA:   3'- -CGCCuuCGUaUAGUUgCGgaugCACC- -5'
24716 5' -49.6 NC_005264.1 + 71686 0.69 0.985449
Target:  5'- aGCGGuuuggugAAGUGUAUCcuACGCUUucucGCGUGGg -3'
miRNA:   3'- -CGCC-------UUCGUAUAGu-UGCGGA----UGCACC- -5'
24716 5' -49.6 NC_005264.1 + 67183 0.68 0.989648
Target:  5'- gGCGGccuGCAgcgcuaugacgCGGCGCCUAUaGUGGg -3'
miRNA:   3'- -CGCCuu-CGUaua--------GUUGCGGAUG-CACC- -5'
24716 5' -49.6 NC_005264.1 + 3273 0.68 0.991416
Target:  5'- gGUGGGugGGCAU-UCAGCGCCagaguCGUGa -3'
miRNA:   3'- -CGCCU--UCGUAuAGUUGCGGau---GCACc -5'
24716 5' -49.6 NC_005264.1 + 6990 0.67 0.995878
Target:  5'- cGCGGGGuugucccuGCGgg-CGGCGCCaACGUGa -3'
miRNA:   3'- -CGCCUU--------CGUauaGUUGCGGaUGCACc -5'
24716 5' -49.6 NC_005264.1 + 88603 0.66 0.997885
Target:  5'- cUGGAGcGCGgc-CAGCGCgCUACGUGc -3'
miRNA:   3'- cGCCUU-CGUauaGUUGCG-GAUGCACc -5'
24716 5' -49.6 NC_005264.1 + 143030 0.67 0.997483
Target:  5'- cGCGGGAGUuuuacGUCGACGCauuucuUGCG-GGc -3'
miRNA:   3'- -CGCCUUCGua---UAGUUGCGg-----AUGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 161980 0.68 0.994402
Target:  5'- cCGGgcGCGg--CAACGCCU-CGgagGGg -3'
miRNA:   3'- cGCCuuCGUauaGUUGCGGAuGCa--CC- -5'
24716 5' -49.6 NC_005264.1 + 126891 0.72 0.936656
Target:  5'- uGUGGggGCGgcGUCGGCGCCccagaugcgGCGUcGGa -3'
miRNA:   3'- -CGCCuuCGUa-UAGUUGCGGa--------UGCA-CC- -5'
24716 5' -49.6 NC_005264.1 + 48245 0.67 0.997483
Target:  5'- uGCGGcAAGCGUGUgGcggugcACGUCUAUG-GGc -3'
miRNA:   3'- -CGCC-UUCGUAUAgU------UGCGGAUGCaCC- -5'
24716 5' -49.6 NC_005264.1 + 136554 0.72 0.939618
Target:  5'- cGCGGGAGCcgAUCGcgauccaggaacGCGCCgcggaaucgaccCGUGGa -3'
miRNA:   3'- -CGCCUUCGuaUAGU------------UGCGGau----------GCACC- -5'
24716 5' -49.6 NC_005264.1 + 29558 0.68 0.993232
Target:  5'- gGCGGAGGCAgagAUCAcguuGCcgcucggccuguuuGCCUGCGg-- -3'
miRNA:   3'- -CGCCUUCGUa--UAGU----UG--------------CGGAUGCacc -5'
24716 5' -49.6 NC_005264.1 + 105582 0.67 0.997483
Target:  5'- cGCGGGcuagGGC---UCgAGCGCCUcaagaccgugguGCGUGGg -3'
miRNA:   3'- -CGCCU----UCGuauAG-UUGCGGA------------UGCACC- -5'
24716 5' -49.6 NC_005264.1 + 87709 0.66 0.998232
Target:  5'- cGUGGAuGC----CGAgGCCUugGUGGc -3'
miRNA:   3'- -CGCCUuCGuauaGUUgCGGAugCACC- -5'
24716 5' -49.6 NC_005264.1 + 10094 0.71 0.954704
Target:  5'- cCGGggGCAUcgCGGCcguguCCgugACGUGGa -3'
miRNA:   3'- cGCCuuCGUAuaGUUGc----GGa--UGCACC- -5'
24716 5' -49.6 NC_005264.1 + 98546 0.69 0.988809
Target:  5'- uGCGGAGGCAUG--GACGCgaACaGUGc -3'
miRNA:   3'- -CGCCUUCGUAUagUUGCGgaUG-CACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.