Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24717 | 3' | -57.2 | NC_005264.1 | + | 37347 | 0.66 | 0.900163 |
Target: 5'- gGCUUUGUUgG-CCGCGCuCGaaaaAGAGCg -3' miRNA: 3'- -CGGAGCAAgCaGGCGCG-GCa---UCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 71283 | 0.66 | 0.898903 |
Target: 5'- aGCCUCGUgcccccCG-CCGCGCCcgauaugcgcGAGCa -3' miRNA: 3'- -CGGAGCAa-----GCaGGCGCGGcau-------CUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 85080 | 0.66 | 0.887171 |
Target: 5'- cGCgUCGUcagauUCGgauaCgGCGCCGUAGucAGCUu -3' miRNA: 3'- -CGgAGCA-----AGCa---GgCGCGGCAUC--UCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 113498 | 0.66 | 0.887171 |
Target: 5'- uGCCgCGUUCcUCCGgGCCG-AGcGCg -3' miRNA: 3'- -CGGaGCAAGcAGGCgCGGCaUCuCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 26307 | 0.66 | 0.887171 |
Target: 5'- cGCgUC-UUCGUCCGCGUCGUcuccggucucGGAccuaGCUa -3' miRNA: 3'- -CGgAGcAAGCAGGCGCGGCA----------UCU----CGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 45595 | 0.66 | 0.873315 |
Target: 5'- gGUCUCGUUC-UCCGCaucGCCG--GGGCg -3' miRNA: 3'- -CGGAGCAAGcAGGCG---CGGCauCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 137307 | 0.66 | 0.873315 |
Target: 5'- cGCCU----UGUCCGCGCCGccuuauGGGCg -3' miRNA: 3'- -CGGAgcaaGCAGGCGCGGCau----CUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 40755 | 0.66 | 0.868994 |
Target: 5'- gGCCUCGgcaaauguuaUGUCCccuacaucuuccgcgGCGCCG-AGAGCg -3' miRNA: 3'- -CGGAGCaa--------GCAGG---------------CGCGGCaUCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 44020 | 0.67 | 0.858629 |
Target: 5'- cGCCUCaugCGUCCa-GCCGUuGGGCg -3' miRNA: 3'- -CGGAGcaaGCAGGcgCGGCAuCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 90816 | 0.67 | 0.850988 |
Target: 5'- aGCCgucucgCGUguggCGgCCGCGCaCGUcGAGCa -3' miRNA: 3'- -CGGa-----GCAa---GCaGGCGCG-GCAuCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 152111 | 0.68 | 0.818583 |
Target: 5'- uGCCgUCGgu-GUCCGCGCCG-GGGGaCa -3' miRNA: 3'- -CGG-AGCaagCAGGCGCGGCaUCUC-Ga -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 37350 | 0.68 | 0.783578 |
Target: 5'- cCCgaCGUUCG-CCGCGCCGccgaGGAGUUc -3' miRNA: 3'- cGGa-GCAAGCaGGCGCGGCa---UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 156377 | 0.68 | 0.783578 |
Target: 5'- cCCgaCGUUCG-CCGCGCCGccgaGGAGUUc -3' miRNA: 3'- cGGa-GCAAGCaGGCGCGGCa---UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 93016 | 0.68 | 0.77448 |
Target: 5'- gGCCUucaccccggCGgcgUCGUCCGCGCCGaaugcGuGCUg -3' miRNA: 3'- -CGGA---------GCa--AGCAGGCGCGGCau---CuCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 98996 | 0.68 | 0.77448 |
Target: 5'- gGCCUgaCGaaaCGaCCGCGCCGauacUAGAGCUg -3' miRNA: 3'- -CGGA--GCaa-GCaGGCGCGGC----AUCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 64507 | 0.69 | 0.746485 |
Target: 5'- cGCCUggaccgcgcUGUUCuGUCCGCGCCGccgcGGAGg- -3' miRNA: 3'- -CGGA---------GCAAG-CAGGCGCGGCa---UCUCga -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 48364 | 0.69 | 0.746485 |
Target: 5'- gGCCUCGUUgCGcagugCCGCGUCGaGGcGCUc -3' miRNA: 3'- -CGGAGCAA-GCa----GGCGCGGCaUCuCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 86744 | 0.69 | 0.717623 |
Target: 5'- uGCCgCGc-UGUUCGCGcCCGUAGAGCc -3' miRNA: 3'- -CGGaGCaaGCAGGCGC-GGCAUCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 59499 | 0.7 | 0.70785 |
Target: 5'- uCCUCGUaUCGUCCGCuuUGgGGGGCUc -3' miRNA: 3'- cGGAGCA-AGCAGGCGcgGCaUCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 30390 | 0.7 | 0.70785 |
Target: 5'- cGUCUCGgcggcggCgGUCgCGCGCCGgugcggAGAGCUg -3' miRNA: 3'- -CGGAGCaa-----G-CAG-GCGCGGCa-----UCUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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