Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24717 | 3' | -57.2 | NC_005264.1 | + | 86744 | 0.69 | 0.717623 |
Target: 5'- uGCCgCGc-UGUUCGCGcCCGUAGAGCc -3' miRNA: 3'- -CGGaGCaaGCAGGCGC-GGCAUCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 59499 | 0.7 | 0.70785 |
Target: 5'- uCCUCGUaUCGUCCGCuuUGgGGGGCUc -3' miRNA: 3'- cGGAGCA-AGCAGGCGcgGCaUCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 82276 | 0.7 | 0.678196 |
Target: 5'- gGUCUCGUggaccaaaagcUCGcuugCCGCGCCGUacuguuugGGGGCg -3' miRNA: 3'- -CGGAGCA-----------AGCa---GGCGCGGCA--------UCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 96302 | 0.7 | 0.668228 |
Target: 5'- cGCCUCGg-CGUCCGCguuGCUGUAcugcgcgaaagcGAGCUc -3' miRNA: 3'- -CGGAGCaaGCAGGCG---CGGCAU------------CUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 51920 | 0.72 | 0.548571 |
Target: 5'- uGUCUCcggUCGUCCGCGCCG-AGcuuGGCg -3' miRNA: 3'- -CGGAGca-AGCAGGCGCGGCaUC---UCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 124021 | 0.73 | 0.519462 |
Target: 5'- cGUCgUCGUucUCGUCCGCGCCGgggucgccgcGGAGUa -3' miRNA: 3'- -CGG-AGCA--AGCAGGCGCGGCa---------UCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 133212 | 1.09 | 0.002805 |
Target: 5'- gGCCUCGUUCGUCCGCGCCGUAGAGCUu -3' miRNA: 3'- -CGGAGCAAGCAGGCGCGGCAUCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 71283 | 0.66 | 0.898903 |
Target: 5'- aGCCUCGUgcccccCG-CCGCGCCcgauaugcgcGAGCa -3' miRNA: 3'- -CGGAGCAa-----GCaGGCGCGGcau-------CUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 137307 | 0.66 | 0.873315 |
Target: 5'- cGCCU----UGUCCGCGCCGccuuauGGGCg -3' miRNA: 3'- -CGGAgcaaGCAGGCGCGGCau----CUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 44020 | 0.67 | 0.858629 |
Target: 5'- cGCCUCaugCGUCCa-GCCGUuGGGCg -3' miRNA: 3'- -CGGAGcaaGCAGGcgCGGCAuCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 48364 | 0.69 | 0.746485 |
Target: 5'- gGCCUCGUUgCGcagugCCGCGUCGaGGcGCUc -3' miRNA: 3'- -CGGAGCAA-GCa----GGCGCGGCaUCuCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 37347 | 0.66 | 0.900163 |
Target: 5'- gGCUUUGUUgG-CCGCGCuCGaaaaAGAGCg -3' miRNA: 3'- -CGGAGCAAgCaGGCGCG-GCa---UCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 64507 | 0.69 | 0.746485 |
Target: 5'- cGCCUggaccgcgcUGUUCuGUCCGCGCCGccgcGGAGg- -3' miRNA: 3'- -CGGA---------GCAAG-CAGGCGCGGCa---UCUCga -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 40755 | 0.66 | 0.868994 |
Target: 5'- gGCCUCGgcaaauguuaUGUCCccuacaucuuccgcgGCGCCG-AGAGCg -3' miRNA: 3'- -CGGAGCaa--------GCAGG---------------CGCGGCaUCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 149417 | 0.7 | 0.70785 |
Target: 5'- cGUCUCGgcggcggCgGUCgCGCGCCGgugcggAGAGCUg -3' miRNA: 3'- -CGGAGCaa-----G-CAG-GCGCGGCa-----UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 156377 | 0.68 | 0.783578 |
Target: 5'- cCCgaCGUUCG-CCGCGCCGccgaGGAGUUc -3' miRNA: 3'- cGGa-GCAAGCaGGCGCGGCa---UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 37350 | 0.68 | 0.783578 |
Target: 5'- cCCgaCGUUCG-CCGCGCCGccgaGGAGUUc -3' miRNA: 3'- cGGa-GCAAGCaGGCGCGGCa---UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 4988 | 0.74 | 0.44522 |
Target: 5'- cGCCaUCGUcgucguucUCGUCCGCGCCGgggucgccgcGGAGUa -3' miRNA: 3'- -CGG-AGCA--------AGCAGGCGCGGCa---------UCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 48201 | 0.72 | 0.548571 |
Target: 5'- -gCUCGUUCGUCUGUGCCGggccGAGa- -3' miRNA: 3'- cgGAGCAAGCAGGCGCGGCau--CUCga -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 85027 | 0.72 | 0.55839 |
Target: 5'- uCCUC-UUCGUCCGCGCCGUcaauGCc -3' miRNA: 3'- cGGAGcAAGCAGGCGCGGCAucu-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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