Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24717 | 3' | -57.2 | NC_005264.1 | + | 152111 | 0.68 | 0.818583 |
Target: 5'- uGCCgUCGgu-GUCCGCGCCG-GGGGaCa -3' miRNA: 3'- -CGG-AGCaagCAGGCGCGGCaUCUC-Ga -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 37350 | 0.68 | 0.783578 |
Target: 5'- cCCgaCGUUCG-CCGCGCCGccgaGGAGUUc -3' miRNA: 3'- cGGa-GCAAGCaGGCGCGGCa---UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 98996 | 0.68 | 0.77448 |
Target: 5'- gGCCUgaCGaaaCGaCCGCGCCGauacUAGAGCUg -3' miRNA: 3'- -CGGA--GCaa-GCaGGCGCGGC----AUCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 93016 | 0.68 | 0.77448 |
Target: 5'- gGCCUucaccccggCGgcgUCGUCCGCGCCGaaugcGuGCUg -3' miRNA: 3'- -CGGA---------GCa--AGCAGGCGCGGCau---CuCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 30390 | 0.7 | 0.70785 |
Target: 5'- cGUCUCGgcggcggCgGUCgCGCGCCGgugcggAGAGCUg -3' miRNA: 3'- -CGGAGCaa-----G-CAG-GCGCGGCa-----UCUCGA- -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 95441 | 0.7 | 0.70785 |
Target: 5'- aGCCgUCGUggaauaCGcuaCCGCGCCGgcGGGCg -3' miRNA: 3'- -CGG-AGCAa-----GCa--GGCGCGGCauCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 85027 | 0.72 | 0.55839 |
Target: 5'- uCCUC-UUCGUCCGCGCCGUcaauGCc -3' miRNA: 3'- cGGAGcAAGCAGGCGCGGCAucu-CGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 48201 | 0.72 | 0.548571 |
Target: 5'- -gCUCGUUCGUCUGUGCCGggccGAGa- -3' miRNA: 3'- cgGAGCAAGCAGGCGCGGCau--CUCga -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 4988 | 0.74 | 0.44522 |
Target: 5'- cGCCaUCGUcgucguucUCGUCCGCGCCGgggucgccgcGGAGUa -3' miRNA: 3'- -CGG-AGCA--------AGCAGGCGCGGCa---------UCUCGa -5' |
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24717 | 3' | -57.2 | NC_005264.1 | + | 85080 | 0.66 | 0.887171 |
Target: 5'- cGCgUCGUcagauUCGgauaCgGCGCCGUAGucAGCUu -3' miRNA: 3'- -CGgAGCA-----AGCa---GgCGCGGCAUC--UCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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