miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24717 3' -57.2 NC_005264.1 + 85080 0.66 0.887171
Target:  5'- cGCgUCGUcagauUCGgauaCgGCGCCGUAGucAGCUu -3'
miRNA:   3'- -CGgAGCA-----AGCa---GgCGCGGCAUC--UCGA- -5'
24717 3' -57.2 NC_005264.1 + 4988 0.74 0.44522
Target:  5'- cGCCaUCGUcgucguucUCGUCCGCGCCGgggucgccgcGGAGUa -3'
miRNA:   3'- -CGG-AGCA--------AGCAGGCGCGGCa---------UCUCGa -5'
24717 3' -57.2 NC_005264.1 + 48201 0.72 0.548571
Target:  5'- -gCUCGUUCGUCUGUGCCGggccGAGa- -3'
miRNA:   3'- cgGAGCAAGCAGGCGCGGCau--CUCga -5'
24717 3' -57.2 NC_005264.1 + 85027 0.72 0.55839
Target:  5'- uCCUC-UUCGUCCGCGCCGUcaauGCc -3'
miRNA:   3'- cGGAGcAAGCAGGCGCGGCAucu-CGa -5'
24717 3' -57.2 NC_005264.1 + 95441 0.7 0.70785
Target:  5'- aGCCgUCGUggaauaCGcuaCCGCGCCGgcGGGCg -3'
miRNA:   3'- -CGG-AGCAa-----GCa--GGCGCGGCauCUCGa -5'
24717 3' -57.2 NC_005264.1 + 30390 0.7 0.70785
Target:  5'- cGUCUCGgcggcggCgGUCgCGCGCCGgugcggAGAGCUg -3'
miRNA:   3'- -CGGAGCaa-----G-CAG-GCGCGGCa-----UCUCGA- -5'
24717 3' -57.2 NC_005264.1 + 93016 0.68 0.77448
Target:  5'- gGCCUucaccccggCGgcgUCGUCCGCGCCGaaugcGuGCUg -3'
miRNA:   3'- -CGGA---------GCa--AGCAGGCGCGGCau---CuCGA- -5'
24717 3' -57.2 NC_005264.1 + 98996 0.68 0.77448
Target:  5'- gGCCUgaCGaaaCGaCCGCGCCGauacUAGAGCUg -3'
miRNA:   3'- -CGGA--GCaa-GCaGGCGCGGC----AUCUCGA- -5'
24717 3' -57.2 NC_005264.1 + 37350 0.68 0.783578
Target:  5'- cCCgaCGUUCG-CCGCGCCGccgaGGAGUUc -3'
miRNA:   3'- cGGa-GCAAGCaGGCGCGGCa---UCUCGA- -5'
24717 3' -57.2 NC_005264.1 + 152111 0.68 0.818583
Target:  5'- uGCCgUCGgu-GUCCGCGCCG-GGGGaCa -3'
miRNA:   3'- -CGG-AGCaagCAGGCGCGGCaUCUC-Ga -5'
24717 3' -57.2 NC_005264.1 + 90816 0.67 0.850988
Target:  5'- aGCCgucucgCGUguggCGgCCGCGCaCGUcGAGCa -3'
miRNA:   3'- -CGGa-----GCAa---GCaGGCGCG-GCAuCUCGa -5'
24717 3' -57.2 NC_005264.1 + 45595 0.66 0.873315
Target:  5'- gGUCUCGUUC-UCCGCaucGCCG--GGGCg -3'
miRNA:   3'- -CGGAGCAAGcAGGCG---CGGCauCUCGa -5'
24717 3' -57.2 NC_005264.1 + 26307 0.66 0.887171
Target:  5'- cGCgUC-UUCGUCCGCGUCGUcuccggucucGGAccuaGCUa -3'
miRNA:   3'- -CGgAGcAAGCAGGCGCGGCA----------UCU----CGA- -5'
24717 3' -57.2 NC_005264.1 + 113498 0.66 0.887171
Target:  5'- uGCCgCGUUCcUCCGgGCCG-AGcGCg -3'
miRNA:   3'- -CGGaGCAAGcAGGCgCGGCaUCuCGa -5'
24717 3' -57.2 NC_005264.1 + 59499 0.7 0.70785
Target:  5'- uCCUCGUaUCGUCCGCuuUGgGGGGCUc -3'
miRNA:   3'- cGGAGCA-AGCAGGCGcgGCaUCUCGA- -5'
24717 3' -57.2 NC_005264.1 + 82276 0.7 0.678196
Target:  5'- gGUCUCGUggaccaaaagcUCGcuugCCGCGCCGUacuguuugGGGGCg -3'
miRNA:   3'- -CGGAGCA-----------AGCa---GGCGCGGCA--------UCUCGa -5'
24717 3' -57.2 NC_005264.1 + 96302 0.7 0.668228
Target:  5'- cGCCUCGg-CGUCCGCguuGCUGUAcugcgcgaaagcGAGCUc -3'
miRNA:   3'- -CGGAGCaaGCAGGCG---CGGCAU------------CUCGA- -5'
24717 3' -57.2 NC_005264.1 + 51920 0.72 0.548571
Target:  5'- uGUCUCcggUCGUCCGCGCCG-AGcuuGGCg -3'
miRNA:   3'- -CGGAGca-AGCAGGCGCGGCaUC---UCGa -5'
24717 3' -57.2 NC_005264.1 + 124021 0.73 0.519462
Target:  5'- cGUCgUCGUucUCGUCCGCGCCGgggucgccgcGGAGUa -3'
miRNA:   3'- -CGG-AGCA--AGCAGGCGCGGCa---------UCUCGa -5'
24717 3' -57.2 NC_005264.1 + 37347 0.66 0.900163
Target:  5'- gGCUUUGUUgG-CCGCGCuCGaaaaAGAGCg -3'
miRNA:   3'- -CGGAGCAAgCaGGCGCG-GCa---UCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.