miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24717 5' -53.5 NC_005264.1 + 120106 0.66 0.971796
Target:  5'- cCGGGUGCCGcgcagaagugggGCGCaGCGAG-CAgGAGGAc -3'
miRNA:   3'- -GUUCGCGGC------------UGCG-CGUUCuGU-UUCCU- -5'
24717 5' -53.5 NC_005264.1 + 161997 0.66 0.971796
Target:  5'- gAGGCGgaUCGugGgGCAcgccagAGACAGAGGc -3'
miRNA:   3'- gUUCGC--GGCugCgCGU------UCUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 48388 0.66 0.971796
Target:  5'- gAGGCGCuCGACGUucGuCGAGGCGAcGGc -3'
miRNA:   3'- gUUCGCG-GCUGCG--C-GUUCUGUUuCCu -5'
24717 5' -53.5 NC_005264.1 + 25092 0.66 0.971796
Target:  5'- -cGGCGCCGGgGacaaGCGGGGCAGAc-- -3'
miRNA:   3'- guUCGCGGCUgCg---CGUUCUGUUUccu -5'
24717 5' -53.5 NC_005264.1 + 61487 0.66 0.971796
Target:  5'- --cGCGCCGACGCGCcccGCGGucucGGc -3'
miRNA:   3'- guuCGCGGCUGCGCGuucUGUUu---CCu -5'
24717 5' -53.5 NC_005264.1 + 20449 0.66 0.971511
Target:  5'- uGGGCGUagccggcggacagCGGCGCGCAugggaGGGCAu-GGAa -3'
miRNA:   3'- gUUCGCG-------------GCUGCGCGU-----UCUGUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 156678 0.66 0.971223
Target:  5'- --cGCGUCGcuuuguacagccCGCGCGAGACccAGGAc -3'
miRNA:   3'- guuCGCGGCu-----------GCGCGUUCUGuuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 130857 0.66 0.968845
Target:  5'- -uGGCGCUGuaGCGCGCAucGGACAcgcGGc -3'
miRNA:   3'- guUCGCGGC--UGCGCGU--UCUGUuu-CCu -5'
24717 5' -53.5 NC_005264.1 + 33986 0.66 0.968845
Target:  5'- -uGGCGaCCagaGCGgGCAAGACGccGGAg -3'
miRNA:   3'- guUCGC-GGc--UGCgCGUUCUGUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 150201 0.66 0.968845
Target:  5'- aCGGGgGCCGGagggcgaGCGaguGGGACGGGGGGc -3'
miRNA:   3'- -GUUCgCGGCUg------CGCg--UUCUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 99853 0.66 0.968845
Target:  5'- gAAGCGCUacuGACGUGCGccaagggcuGGGCGAGuccGGAc -3'
miRNA:   3'- gUUCGCGG---CUGCGCGU---------UCUGUUU---CCU- -5'
24717 5' -53.5 NC_005264.1 + 31174 0.66 0.968845
Target:  5'- aCGGGgGCCGGagggcgaGCGaguGGGACGGGGGGc -3'
miRNA:   3'- -GUUCgCGGCUg------CGCg--UUCUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 3621 0.66 0.968845
Target:  5'- uGGGCGCUGugG-GCGGGGUggGGGu -3'
miRNA:   3'- gUUCGCGGCugCgCGUUCUGuuUCCu -5'
24717 5' -53.5 NC_005264.1 + 110874 0.66 0.968845
Target:  5'- -cAGCGaCGAUG-GCcgAAGACAGGGGAa -3'
miRNA:   3'- guUCGCgGCUGCgCG--UUCUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 66498 0.66 0.968845
Target:  5'- gCGGGCuGCgCGGCGCGCucGACGAGc-- -3'
miRNA:   3'- -GUUCG-CG-GCUGCGCGuuCUGUUUccu -5'
24717 5' -53.5 NC_005264.1 + 11831 0.66 0.968845
Target:  5'- -uGGCGCUGuaGCGCGCAucGGACAcgcGGc -3'
miRNA:   3'- guUCGCGGC--UGCGCGU--UCUGUuu-CCu -5'
24717 5' -53.5 NC_005264.1 + 132527 0.66 0.965681
Target:  5'- aGAG-GUCGACuucCGCGAcGGCGAAGGAg -3'
miRNA:   3'- gUUCgCGGCUGc--GCGUU-CUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 162760 0.66 0.965681
Target:  5'- --uGCGCCGAUaaGUGCGAGGugcuggagcgUggGGGAg -3'
miRNA:   3'- guuCGCGGCUG--CGCGUUCU----------GuuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 46526 0.66 0.965681
Target:  5'- gCAGGCcgcuCCGGCGCGCAAGAagccCAGAu-- -3'
miRNA:   3'- -GUUCGc---GGCUGCGCGUUCU----GUUUccu -5'
24717 5' -53.5 NC_005264.1 + 38605 0.66 0.965681
Target:  5'- aGAGCuucgccucGCCG-CgGCGCGAGACAcgacAGGAg -3'
miRNA:   3'- gUUCG--------CGGCuG-CGCGUUCUGUu---UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.