Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24717 | 5' | -53.5 | NC_005264.1 | + | 61487 | 0.66 | 0.971796 |
Target: 5'- --cGCGCCGACGCGCcccGCGGucucGGc -3' miRNA: 3'- guuCGCGGCUGCGCGuucUGUUu---CCu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 30855 | 0.66 | 0.964689 |
Target: 5'- -cGGCGgCGGCGCGCcgcccgguAGGCAAcggcgucucgaucgGGGAc -3' miRNA: 3'- guUCGCgGCUGCGCGu-------UCUGUU--------------UCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 156536 | 0.66 | 0.962298 |
Target: 5'- gAAGCcUCGcCGCGCAAGuGCAGcuGGGAg -3' miRNA: 3'- gUUCGcGGCuGCGCGUUC-UGUU--UCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 52870 | 0.66 | 0.962298 |
Target: 5'- aCGAcGUGCacACGCGCGAG-CGAGGGGc -3' miRNA: 3'- -GUU-CGCGgcUGCGCGUUCuGUUUCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 30012 | 0.66 | 0.962298 |
Target: 5'- aGAGCGCCgcaGAUGUGCugcggagguuAGGCAAauggGGGAa -3' miRNA: 3'- gUUCGCGG---CUGCGCGu---------UCUGUU----UCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 162460 | 0.66 | 0.962298 |
Target: 5'- --cGCGCCGGCGCuGCcccccaAAGACcaauAAGGu -3' miRNA: 3'- guuCGCGGCUGCG-CG------UUCUGu---UUCCu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 158953 | 0.66 | 0.962298 |
Target: 5'- -cGGCGUaaaCGACGCG-AAGACGGAGa- -3' miRNA: 3'- guUCGCG---GCUGCGCgUUCUGUUUCcu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 129596 | 0.66 | 0.962298 |
Target: 5'- gCAGGCGCUG-CgGCGCGGcGGCGAAGc- -3' miRNA: 3'- -GUUCGCGGCuG-CGCGUU-CUGUUUCcu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 109807 | 0.66 | 0.962298 |
Target: 5'- -cGGgGCCauuuccauGACGUGCGugcagguugcggAGGCAGAGGAu -3' miRNA: 3'- guUCgCGG--------CUGCGCGU------------UCUGUUUCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 46526 | 0.66 | 0.965681 |
Target: 5'- gCAGGCcgcuCCGGCGCGCAAGAagccCAGAu-- -3' miRNA: 3'- -GUUCGc---GGCUGCGCGUUCU----GUUUccu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 95462 | 0.66 | 0.965681 |
Target: 5'- --cGCGCCGGCGgGCGcaGCGAGcgcGGGc -3' miRNA: 3'- guuCGCGGCUGCgCGUucUGUUU---CCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 43734 | 0.66 | 0.965681 |
Target: 5'- --uGCGCCGAUaaGUGCGAGGugcuggagcgUggGGGAg -3' miRNA: 3'- guuCGCGGCUG--CGCGUUCU----------GuuUCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 161997 | 0.66 | 0.971796 |
Target: 5'- gAGGCGgaUCGugGgGCAcgccagAGACAGAGGc -3' miRNA: 3'- gUUCGC--GGCugCgCGU------UCUGUUUCCu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 156678 | 0.66 | 0.971223 |
Target: 5'- --cGCGUCGcuuuguacagccCGCGCGAGACccAGGAc -3' miRNA: 3'- guuCGCGGCu-----------GCGCGUUCUGuuUCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 66498 | 0.66 | 0.968845 |
Target: 5'- gCGGGCuGCgCGGCGCGCucGACGAGc-- -3' miRNA: 3'- -GUUCG-CG-GCUGCGCGuuCUGUUUccu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 31174 | 0.66 | 0.968845 |
Target: 5'- aCGGGgGCCGGagggcgaGCGaguGGGACGGGGGGc -3' miRNA: 3'- -GUUCgCGGCUg------CGCg--UUCUGUUUCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 11831 | 0.66 | 0.968845 |
Target: 5'- -uGGCGCUGuaGCGCGCAucGGACAcgcGGc -3' miRNA: 3'- guUCGCGGC--UGCGCGU--UCUGUuu-CCu -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 38605 | 0.66 | 0.965681 |
Target: 5'- aGAGCuucgccucGCCG-CgGCGCGAGACAcgacAGGAg -3' miRNA: 3'- gUUCG--------CGGCuG-CGCGUUCUGUu---UCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 13500 | 0.66 | 0.965681 |
Target: 5'- aGAG-GUCGACuucCGCGAcGGCGAAGGAg -3' miRNA: 3'- gUUCgCGGCUGc--GCGUU-CUGUUUCCU- -5' |
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24717 | 5' | -53.5 | NC_005264.1 | + | 97687 | 0.66 | 0.965681 |
Target: 5'- aGGGCGCCGcCGCGguGuuggucauaGGCAaccGAGGGc -3' miRNA: 3'- gUUCGCGGCuGCGCguU---------CUGU---UUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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