miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24717 5' -53.5 NC_005264.1 + 133246 1.09 0.005324
Target:  5'- cCAAGCGCCGACGCGCAAGACAAAGGAc -3'
miRNA:   3'- -GUUCGCGGCUGCGCGUUCUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 130977 0.78 0.433139
Target:  5'- --uGCGCCGAC-CGCGAGGCGcuGGAa -3'
miRNA:   3'- guuCGCGGCUGcGCGUUCUGUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 144505 0.73 0.673421
Target:  5'- aGAGUGCCGAagGCGUcguGGGCAGAGGc -3'
miRNA:   3'- gUUCGCGGCUg-CGCGu--UCUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 37563 0.73 0.683739
Target:  5'- aCAGcGCGCCGcCGCGgAGGGCGAAGa- -3'
miRNA:   3'- -GUU-CGCGGCuGCGCgUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 47856 0.73 0.687854
Target:  5'- gCAAGCGCCGGCacgcgccucaaguucGCGCuAGGCugcGGGAu -3'
miRNA:   3'- -GUUCGCGGCUG---------------CGCGuUCUGuu-UCCU- -5'
24717 5' -53.5 NC_005264.1 + 134741 0.73 0.71135
Target:  5'- aUAGGCGCCGGUGCGCAAuaacgccugacuuuGACGAAGa- -3'
miRNA:   3'- -GUUCGCGGCUGCGCGUU--------------CUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 75102 0.72 0.724474
Target:  5'- gCAGGCGCCGGCGC-CGAG-Cu-GGGGc -3'
miRNA:   3'- -GUUCGCGGCUGCGcGUUCuGuuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 21568 0.72 0.734477
Target:  5'- gAGGaCGCCGGCGC-CGAGACcguggAAAGGGu -3'
miRNA:   3'- gUUC-GCGGCUGCGcGUUCUG-----UUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 45341 0.72 0.734477
Target:  5'- --cGCGCCG-CGCcCGAGACGAGGcGAa -3'
miRNA:   3'- guuCGCGGCuGCGcGUUCUGUUUC-CU- -5'
24717 5' -53.5 NC_005264.1 + 106028 0.72 0.744387
Target:  5'- aGGGcCGCCGcGCaGCGCAGGACAAAGc- -3'
miRNA:   3'- gUUC-GCGGC-UG-CGCGUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 10310 0.72 0.754196
Target:  5'- cCGGGCGCagCGACGCGCAcugagcaagcgcGGAacGAGGAa -3'
miRNA:   3'- -GUUCGCG--GCUGCGCGU------------UCUguUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 45148 0.72 0.754196
Target:  5'- aCAGGCGCCacGACGCG-GAGGCA--GGAg -3'
miRNA:   3'- -GUUCGCGG--CUGCGCgUUCUGUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 129337 0.72 0.754196
Target:  5'- cCGGGCGCagCGACGCGCAcugagcaagcgcGGAacGAGGAa -3'
miRNA:   3'- -GUUCGCG--GCUGCGCGU------------UCUguUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 27456 0.72 0.754196
Target:  5'- --uGCGCCGAgcgGCGCA--GCAAAGGAc -3'
miRNA:   3'- guuCGCGGCUg--CGCGUucUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 150865 0.71 0.773471
Target:  5'- --cGUGCCGcGCGCgGCAAGACAuGGGc -3'
miRNA:   3'- guuCGCGGC-UGCG-CGUUCUGUuUCCu -5'
24717 5' -53.5 NC_005264.1 + 31839 0.71 0.773471
Target:  5'- --cGUGCCGcGCGCgGCAAGACAuGGGc -3'
miRNA:   3'- guuCGCGGC-UGCG-CGUUCUGUuUCCu -5'
24717 5' -53.5 NC_005264.1 + 13560 0.71 0.782917
Target:  5'- aGAGCGgCG-CGgGCGGGACcGGGGAa -3'
miRNA:   3'- gUUCGCgGCuGCgCGUUCUGuUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 149740 0.71 0.782917
Target:  5'- -uGGCGCCGGCGgGCAgAGGCGAGc-- -3'
miRNA:   3'- guUCGCGGCUGCgCGU-UCUGUUUccu -5'
24717 5' -53.5 NC_005264.1 + 132587 0.71 0.782917
Target:  5'- aGAGCGgCG-CGgGCGGGACcGGGGAa -3'
miRNA:   3'- gUUCGCgGCuGCgCGUUCUGuUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 38388 0.71 0.792224
Target:  5'- aGAGCGgCGACGC-CGAGACAGAu-- -3'
miRNA:   3'- gUUCGCgGCUGCGcGUUCUGUUUccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.