miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24717 5' -53.5 NC_005264.1 + 699 0.68 0.926778
Target:  5'- cCAGGCaCCG-CGCGUacgagaGAGACAGAGaGAg -3'
miRNA:   3'- -GUUCGcGGCuGCGCG------UUCUGUUUC-CU- -5'
24717 5' -53.5 NC_005264.1 + 3324 0.68 0.915457
Target:  5'- --cGgGCCGACGgGCAAuacuggccuuGGCGAGGGu -3'
miRNA:   3'- guuCgCGGCUGCgCGUU----------CUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 3487 0.69 0.882899
Target:  5'- --uGcCGCCGcACGCgGCGggGGGCAGGGGAu -3'
miRNA:   3'- guuC-GCGGC-UGCG-CGU--UCUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 3621 0.66 0.968845
Target:  5'- uGGGCGCUGugG-GCGGGGUggGGGu -3'
miRNA:   3'- gUUCGCGGCugCgCGUUCUGuuUCCu -5'
24717 5' -53.5 NC_005264.1 + 3674 0.67 0.950776
Target:  5'- uGGGCgGCCGucucgGCG-GCGAGACGagGAGGAc -3'
miRNA:   3'- gUUCG-CGGC-----UGCgCGUUCUGU--UUCCU- -5'
24717 5' -53.5 NC_005264.1 + 5209 0.68 0.926778
Target:  5'- --cGCGCCG-CG-GCGAGGCGAAGc- -3'
miRNA:   3'- guuCGCGGCuGCgCGUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 5257 0.67 0.95485
Target:  5'- aGAGCGCCGGgaggcgaguCGCGgCcGGACGgcGGGg -3'
miRNA:   3'- gUUCGCGGCU---------GCGC-GuUCUGUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 7075 0.68 0.932069
Target:  5'- -cGGCGCCGuCGCGCugcgGGGAacuGAGGu -3'
miRNA:   3'- guUCGCGGCuGCGCG----UUCUgu-UUCCu -5'
24717 5' -53.5 NC_005264.1 + 7261 0.67 0.94191
Target:  5'- gGAG-GUCGGCGC-CAGGACGAAGa- -3'
miRNA:   3'- gUUCgCGGCUGCGcGUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 10310 0.72 0.754196
Target:  5'- cCGGGCGCagCGACGCGCAcugagcaagcgcGGAacGAGGAa -3'
miRNA:   3'- -GUUCGCG--GCUGCGCGU------------UCUguUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 11831 0.66 0.968845
Target:  5'- -uGGCGCUGuaGCGCGCAucGGACAcgcGGc -3'
miRNA:   3'- guUCGCGGC--UGCGCGU--UCUGUuu-CCu -5'
24717 5' -53.5 NC_005264.1 + 13500 0.66 0.965681
Target:  5'- aGAG-GUCGACuucCGCGAcGGCGAAGGAg -3'
miRNA:   3'- gUUCgCGGCUGc--GCGUU-CUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 13560 0.71 0.782917
Target:  5'- aGAGCGgCG-CGgGCGGGACcGGGGAa -3'
miRNA:   3'- gUUCGCgGCuGCgCGUUCUGuUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 13960 0.66 0.962298
Target:  5'- --cGCGgCGACGaggagacgaGCGAGACGcGGGGu -3'
miRNA:   3'- guuCGCgGCUGCg--------CGUUCUGUuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 16029 0.66 0.962298
Target:  5'- --cGCGCCucCGUGC-AGuCGAGGGAa -3'
miRNA:   3'- guuCGCGGcuGCGCGuUCuGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 16393 0.68 0.931551
Target:  5'- --uGC-CCGugGCGCAuuggcacucggggAGGCAAGGGc -3'
miRNA:   3'- guuCGcGGCugCGCGU-------------UCUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 18052 0.68 0.921241
Target:  5'- gAAGCGgCGGCGcCGCGAGcCAGGGc- -3'
miRNA:   3'- gUUCGCgGCUGC-GCGUUCuGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 18422 0.67 0.937112
Target:  5'- gCAGGCGCgcccucucgcuCGGCGCG-GGGuCGAAGGAc -3'
miRNA:   3'- -GUUCGCG-----------GCUGCGCgUUCuGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 19424 0.68 0.909427
Target:  5'- gAGGCGCCggguGugGcCGCGGGGCGcGGGu -3'
miRNA:   3'- gUUCGCGG----CugC-GCGUUCUGUuUCCu -5'
24717 5' -53.5 NC_005264.1 + 20449 0.66 0.971511
Target:  5'- uGGGCGUagccggcggacagCGGCGCGCAugggaGGGCAu-GGAa -3'
miRNA:   3'- gUUCGCG-------------GCUGCGCGU-----UCUGUuuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.