miRNA display CGI


Results 1 - 20 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24717 5' -53.5 NC_005264.1 + 133246 1.09 0.005324
Target:  5'- cCAAGCGCCGACGCGCAAGACAAAGGAc -3'
miRNA:   3'- -GUUCGCGGCUGCGCGUUCUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 23218 0.7 0.860578
Target:  5'- --cGUGCCGcCGCGCGAGuuGuuGGAu -3'
miRNA:   3'- guuCGCGGCuGCGCGUUCugUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 94414 0.69 0.882899
Target:  5'- -cGGCGCgGACuGCGCGAucgcuGACGuGGGAu -3'
miRNA:   3'- guUCGCGgCUG-CGCGUU-----CUGUuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 61487 0.66 0.971796
Target:  5'- --cGCGCCGACGCGCcccGCGGucucGGc -3'
miRNA:   3'- guuCGCGGCUGCGCGuucUGUUu---CCu -5'
24717 5' -53.5 NC_005264.1 + 21568 0.72 0.734477
Target:  5'- gAGGaCGCCGGCGC-CGAGACcguggAAAGGGu -3'
miRNA:   3'- gUUC-GCGGCUGCGcGUUCUG-----UUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 106028 0.72 0.744387
Target:  5'- aGGGcCGCCGcGCaGCGCAGGACAAAGc- -3'
miRNA:   3'- gUUC-GCGGC-UG-CGCGUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 129337 0.72 0.754196
Target:  5'- cCGGGCGCagCGACGCGCAcugagcaagcgcGGAacGAGGAa -3'
miRNA:   3'- -GUUCGCG--GCUGCGCGU------------UCUguUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 150865 0.71 0.773471
Target:  5'- --cGUGCCGcGCGCgGCAAGACAuGGGc -3'
miRNA:   3'- guuCGCGGC-UGCG-CGUUCUGUuUCCu -5'
24717 5' -53.5 NC_005264.1 + 157415 0.71 0.792224
Target:  5'- aGAGCGgCGACGC-CGAGACAGAu-- -3'
miRNA:   3'- gUUCGCgGCUGCGcGUUCUGUUUccu -5'
24717 5' -53.5 NC_005264.1 + 30078 0.7 0.852703
Target:  5'- -cGGCGCCGcCGCGCccGGACAGAa-- -3'
miRNA:   3'- guUCGCGGCuGCGCGu-UCUGUUUccu -5'
24717 5' -53.5 NC_005264.1 + 114298 0.7 0.827869
Target:  5'- aAGGCGacgggGGCGCGCGGGACGAcgcGGAa -3'
miRNA:   3'- gUUCGCgg---CUGCGCGUUCUGUUu--CCU- -5'
24717 5' -53.5 NC_005264.1 + 159669 0.71 0.792224
Target:  5'- --cGCGCCGuCGCGC---GCGGAGGGu -3'
miRNA:   3'- guuCGCGGCuGCGCGuucUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 37563 0.73 0.683739
Target:  5'- aCAGcGCGCCGcCGCGgAGGGCGAAGa- -3'
miRNA:   3'- -GUU-CGCGGCuGCGCgUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 147567 0.7 0.836342
Target:  5'- -uGGcCGCCGACGUGUgcGAC-GGGGAa -3'
miRNA:   3'- guUC-GCGGCUGCGCGuuCUGuUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 134741 0.73 0.71135
Target:  5'- aUAGGCGCCGGUGCGCAAuaacgccugacuuuGACGAAGa- -3'
miRNA:   3'- -GUUCGCGGCUGCGCGUU--------------CUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 132587 0.71 0.782917
Target:  5'- aGAGCGgCG-CGgGCGGGACcGGGGAa -3'
miRNA:   3'- gUUCGCgGCuGCgCGUUCUGuUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 58767 0.7 0.836342
Target:  5'- gAGGCGCaCG-CGCGguGGucggcGCAGAGGAu -3'
miRNA:   3'- gUUCGCG-GCuGCGCguUC-----UGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 144283 0.69 0.875681
Target:  5'- --cGUGCCG-CGCGCAA-ACAGGGGu -3'
miRNA:   3'- guuCGCGGCuGCGCGUUcUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 75102 0.72 0.724474
Target:  5'- gCAGGCGCCGGCGC-CGAG-Cu-GGGGc -3'
miRNA:   3'- -GUUCGCGGCUGCGcGUUCuGuuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 27456 0.72 0.754196
Target:  5'- --uGCGCCGAgcgGCGCA--GCAAAGGAc -3'
miRNA:   3'- guuCGCGGCUg--CGCGUucUGUUUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.