miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24717 5' -53.5 NC_005264.1 + 60851 0.69 0.896639
Target:  5'- -cGGCGUCGGCGCGUgcgcGGCAAAGu- -3'
miRNA:   3'- guUCGCGGCUGCGCGuu--CUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 94414 0.69 0.882899
Target:  5'- -cGGCGCgGACuGCGCGAucgcuGACGuGGGAu -3'
miRNA:   3'- guUCGCGgCUG-CGCGUU-----CUGUuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 159669 0.71 0.792224
Target:  5'- --cGCGCCGuCGCGC---GCGGAGGGu -3'
miRNA:   3'- guuCGCGGCuGCGCGuucUGUUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 75102 0.72 0.724474
Target:  5'- gCAGGCGCCGGCGC-CGAG-Cu-GGGGc -3'
miRNA:   3'- -GUUCGCGGCUGCGcGUUCuGuuUCCU- -5'
24717 5' -53.5 NC_005264.1 + 119726 0.68 0.926778
Target:  5'- cCAGGCaCCG-CGCGUacgagaGAGACAGAGaGAg -3'
miRNA:   3'- -GUUCGcGGCuGCGCG------UUCUGUUUC-CU- -5'
24717 5' -53.5 NC_005264.1 + 53979 0.68 0.915457
Target:  5'- -uGGCGCCGGaacgGCgGCGAGACu--GGAu -3'
miRNA:   3'- guUCGCGGCUg---CG-CGUUCUGuuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 23218 0.7 0.860578
Target:  5'- --cGUGCCGcCGCGCGAGuuGuuGGAu -3'
miRNA:   3'- guuCGCGGCuGCGCGUUCugUuuCCU- -5'
24717 5' -53.5 NC_005264.1 + 134741 0.73 0.71135
Target:  5'- aUAGGCGCCGGUGCGCAAuaacgccugacuuuGACGAAGa- -3'
miRNA:   3'- -GUUCGCGGCUGCGCGUU--------------CUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 82963 0.68 0.915457
Target:  5'- -cGGuCGCCGcCGCGCccccguGACGAAGGu -3'
miRNA:   3'- guUC-GCGGCuGCGCGuu----CUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 37563 0.73 0.683739
Target:  5'- aCAGcGCGCCGcCGCGgAGGGCGAAGa- -3'
miRNA:   3'- -GUU-CGCGGCuGCGCgUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 144283 0.69 0.875681
Target:  5'- --cGUGCCG-CGCGCAA-ACAGGGGu -3'
miRNA:   3'- guuCGCGGCuGCGCGUUcUGUUUCCu -5'
24717 5' -53.5 NC_005264.1 + 19424 0.68 0.909427
Target:  5'- gAGGCGCCggguGugGcCGCGGGGCGcGGGu -3'
miRNA:   3'- gUUCGCGG----CugC-GCGUUCUGUuUCCu -5'
24717 5' -53.5 NC_005264.1 + 147567 0.7 0.836342
Target:  5'- -uGGcCGCCGACGUGUgcGAC-GGGGAa -3'
miRNA:   3'- guUC-GCGGCUGCGCGuuCUGuUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 157415 0.71 0.792224
Target:  5'- aGAGCGgCGACGC-CGAGACAGAu-- -3'
miRNA:   3'- gUUCGCgGCUGCGcGUUCUGUUUccu -5'
24717 5' -53.5 NC_005264.1 + 129337 0.72 0.754196
Target:  5'- cCGGGCGCagCGACGCGCAcugagcaagcgcGGAacGAGGAa -3'
miRNA:   3'- -GUUCGCG--GCUGCGCGU------------UCUguUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 21568 0.72 0.734477
Target:  5'- gAGGaCGCCGGCGC-CGAGACcguggAAAGGGu -3'
miRNA:   3'- gUUC-GCGGCUGCGcGUUCUG-----UUUCCU- -5'
24717 5' -53.5 NC_005264.1 + 126102 0.68 0.932069
Target:  5'- -cGGCGCCGuCGCGCugcgGGGAacuGAGGu -3'
miRNA:   3'- guUCGCGGCuGCGCG----UUCUgu-UUCCu -5'
24717 5' -53.5 NC_005264.1 + 124236 0.68 0.926778
Target:  5'- --cGCGCCG-CG-GCGAGGCGAAGc- -3'
miRNA:   3'- guuCGCGGCuGCgCGUUCUGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 18052 0.68 0.921241
Target:  5'- gAAGCGgCGGCGcCGCGAGcCAGGGc- -3'
miRNA:   3'- gUUCGCgGCUGC-GCGUUCuGUUUCcu -5'
24717 5' -53.5 NC_005264.1 + 54911 0.68 0.915457
Target:  5'- --cGCGUCGGCGguaCGUGAGAUGAAGGu -3'
miRNA:   3'- guuCGCGGCUGC---GCGUUCUGUUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.