miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24718 3' -62.4 NC_005264.1 + 59962 0.66 0.661707
Target:  5'- gUgUCCgcgCCGcucagccacGCGGCGGUGgCCGCGa -3'
miRNA:   3'- uGgAGGa--GGCua-------CGCCGCCAC-GGCGU- -5'
24718 3' -62.4 NC_005264.1 + 146670 0.66 0.661707
Target:  5'- gACCgaCCUCCGcgcaggGCGGCauUGCCGCc -3'
miRNA:   3'- -UGGa-GGAGGCua----CGCCGccACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 119599 0.66 0.651928
Target:  5'- aACCUCagUCCag-GCGGCacGUGCCGCc -3'
miRNA:   3'- -UGGAGg-AGGcuaCGCCGc-CACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 150813 0.66 0.651928
Target:  5'- cGCUucgCCUaaGG-GCGGCGGUcgccGCCGCAg -3'
miRNA:   3'- -UGGa--GGAggCUaCGCCGCCA----CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 31787 0.66 0.651928
Target:  5'- cGCUucgCCUaaGG-GCGGCGGUcgccGCCGCAg -3'
miRNA:   3'- -UGGa--GGAggCUaCGCCGCCA----CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 125277 0.66 0.642136
Target:  5'- uGCCgCCUCCGucGCGGUcGUcGCCGCc -3'
miRNA:   3'- -UGGaGGAGGCuaCGCCGcCA-CGGCGu -5'
24718 3' -62.4 NC_005264.1 + 6250 0.66 0.642136
Target:  5'- uGCCgCCUCCGucGCGGUcGUcGCCGCc -3'
miRNA:   3'- -UGGaGGAGGCuaCGCCGcCA-CGGCGu -5'
24718 3' -62.4 NC_005264.1 + 95343 0.66 0.640176
Target:  5'- --aUCCgaggcaauggggCCGAcggGCGGCGcGUGCCGCc -3'
miRNA:   3'- uggAGGa-----------GGCUa--CGCCGC-CACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 91616 0.66 0.632336
Target:  5'- uGCCUcugcugcaCCUCCGGga-GGUGGUcGUCGCAa -3'
miRNA:   3'- -UGGA--------GGAGGCUacgCCGCCA-CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 851 0.66 0.632336
Target:  5'- gGCCUuucccCCUCCGA---GGCGuUGCCGCGc -3'
miRNA:   3'- -UGGA-----GGAGGCUacgCCGCcACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 119877 0.66 0.632336
Target:  5'- gGCCUuucccCCUCCGA---GGCGuUGCCGCGc -3'
miRNA:   3'- -UGGA-----GGAGGCUacgCCGCcACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 97600 0.66 0.609806
Target:  5'- cGCUUCCUCgGccGCGGCGGcuacggcucaguauUcuacaGCCGCAg -3'
miRNA:   3'- -UGGAGGAGgCuaCGCCGCC--------------A-----CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 143297 0.66 0.602962
Target:  5'- uACCUCgCUCCGGcaacGuUGGCGGcgGCCGUc -3'
miRNA:   3'- -UGGAG-GAGGCUa---C-GCCGCCa-CGGCGu -5'
24718 3' -62.4 NC_005264.1 + 89703 0.66 0.601985
Target:  5'- -gCUCCgUCCc-UGCGGCGGUGCUuguuucuGCAc -3'
miRNA:   3'- ugGAGG-AGGcuACGCCGCCACGG-------CGU- -5'
24718 3' -62.4 NC_005264.1 + 33981 0.67 0.581525
Target:  5'- gACCcUCUCgCGAacgUGCGGCGGcccauguagccgGCCGCGu -3'
miRNA:   3'- -UGGaGGAG-GCU---ACGCCGCCa-----------CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 153008 0.67 0.581525
Target:  5'- gACCcUCUCgCGAacgUGCGGCGGcccauguagccgGCCGCGu -3'
miRNA:   3'- -UGGaGGAG-GCU---ACGCCGCCa-----------CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 105514 0.67 0.564102
Target:  5'- cGCCUCUguaucuUUCGAUGCGGaugcgaucgcUGaGUGCCGCu -3'
miRNA:   3'- -UGGAGG------AGGCUACGCC----------GC-CACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 51086 0.67 0.564102
Target:  5'- gACCUgCUUCGcgGuCGcCGGUGCUGCGg -3'
miRNA:   3'- -UGGAgGAGGCuaC-GCcGCCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 104081 0.67 0.54491
Target:  5'- cACCgcgcgugcgCCUCUGAUaGCGcaGCGGcgGCCGCGg -3'
miRNA:   3'- -UGGa--------GGAGGCUA-CGC--CGCCa-CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 122815 0.67 0.54491
Target:  5'- gACCgCCgCCGAUcugcGUGGCGGU-CCGCGa -3'
miRNA:   3'- -UGGaGGaGGCUA----CGCCGCCAcGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.