miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24718 3' -62.4 NC_005264.1 + 12951 0.67 0.54491
Target:  5'- cGCCguugCCUaCCGG-GCGGCGcGcGCCGCc -3'
miRNA:   3'- -UGGa---GGA-GGCUaCGCCGC-CaCGGCGu -5'
24718 3' -62.4 NC_005264.1 + 122815 0.67 0.54491
Target:  5'- gACCgCCgCCGAUcugcGUGGCGGU-CCGCGa -3'
miRNA:   3'- -UGGaGGaGGCUA----CGCCGCCAcGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 153856 0.68 0.535392
Target:  5'- uACCUUUgCCGAguucucGCGGUuuuGGUGCUGCAg -3'
miRNA:   3'- -UGGAGGaGGCUa-----CGCCG---CCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 125281 0.68 0.516539
Target:  5'- ---cCCUCCGcgGCGGCGcGcUGUCGCu -3'
miRNA:   3'- uggaGGAGGCuaCGCCGC-C-ACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 33943 0.69 0.479682
Target:  5'- aGCCcgCCgucgUCGAgGaCGaGCGGUGCCGCAa -3'
miRNA:   3'- -UGGa-GGa---GGCUaC-GC-CGCCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 69345 0.69 0.461741
Target:  5'- aACCUCgaCUCUGGcccguuUGUGGCGcGUGUCGCGu -3'
miRNA:   3'- -UGGAG--GAGGCU------ACGCCGC-CACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 153692 0.7 0.401918
Target:  5'- ---cCCUCCGAgacaucucugGUGGCGGUGuuGCGu -3'
miRNA:   3'- uggaGGAGGCUa---------CGCCGCCACggCGU- -5'
24718 3' -62.4 NC_005264.1 + 96653 0.71 0.347257
Target:  5'- cACCgCCcgCCGAUGCgGGCGGUG-CGCu -3'
miRNA:   3'- -UGGaGGa-GGCUACG-CCGCCACgGCGu -5'
24718 3' -62.4 NC_005264.1 + 76648 0.72 0.325514
Target:  5'- gACCaUCgaggCCGAUGCGGCcaccGGUGCgGCAg -3'
miRNA:   3'- -UGGaGGa---GGCUACGCCG----CCACGgCGU- -5'
24718 3' -62.4 NC_005264.1 + 52950 0.72 0.291559
Target:  5'- cGCCgaugcagcgCCUCUac-GCGGCGGUGCUGCGa -3'
miRNA:   3'- -UGGa--------GGAGGcuaCGCCGCCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 157401 0.74 0.235341
Target:  5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3'
miRNA:   3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 38374 0.74 0.235341
Target:  5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3'
miRNA:   3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 157675 0.74 0.228858
Target:  5'- gGCCUCCgaaaggcuucggaCGAUGCGGCGcG-GCCGCGc -3'
miRNA:   3'- -UGGAGGag-----------GCUACGCCGC-CaCGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 138479 0.75 0.206368
Target:  5'- uACUUCgUUCCGuaccUGCGGCGGuUGCCGCGc -3'
miRNA:   3'- -UGGAG-GAGGCu---ACGCCGCC-ACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 18002 0.75 0.196792
Target:  5'- cACCggCUCUGAcgGCGGCGGgucgGCCGCGg -3'
miRNA:   3'- -UGGagGAGGCUa-CGCCGCCa---CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 133431 1.07 0.001091
Target:  5'- gACCUCCUCCGAUGCGGCGGUGCCGCAc -3'
miRNA:   3'- -UGGAGGAGGCUACGCCGCCACGGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.