Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24718 | 3' | -62.4 | NC_005264.1 | + | 12951 | 0.67 | 0.54491 |
Target: 5'- cGCCguugCCUaCCGG-GCGGCGcGcGCCGCc -3' miRNA: 3'- -UGGa---GGA-GGCUaCGCCGC-CaCGGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 122815 | 0.67 | 0.54491 |
Target: 5'- gACCgCCgCCGAUcugcGUGGCGGU-CCGCGa -3' miRNA: 3'- -UGGaGGaGGCUA----CGCCGCCAcGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 153856 | 0.68 | 0.535392 |
Target: 5'- uACCUUUgCCGAguucucGCGGUuuuGGUGCUGCAg -3' miRNA: 3'- -UGGAGGaGGCUa-----CGCCG---CCACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 125281 | 0.68 | 0.516539 |
Target: 5'- ---cCCUCCGcgGCGGCGcGcUGUCGCu -3' miRNA: 3'- uggaGGAGGCuaCGCCGC-C-ACGGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 33943 | 0.69 | 0.479682 |
Target: 5'- aGCCcgCCgucgUCGAgGaCGaGCGGUGCCGCAa -3' miRNA: 3'- -UGGa-GGa---GGCUaC-GC-CGCCACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 69345 | 0.69 | 0.461741 |
Target: 5'- aACCUCgaCUCUGGcccguuUGUGGCGcGUGUCGCGu -3' miRNA: 3'- -UGGAG--GAGGCU------ACGCCGC-CACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 153692 | 0.7 | 0.401918 |
Target: 5'- ---cCCUCCGAgacaucucugGUGGCGGUGuuGCGu -3' miRNA: 3'- uggaGGAGGCUa---------CGCCGCCACggCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 96653 | 0.71 | 0.347257 |
Target: 5'- cACCgCCcgCCGAUGCgGGCGGUG-CGCu -3' miRNA: 3'- -UGGaGGa-GGCUACG-CCGCCACgGCGu -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 76648 | 0.72 | 0.325514 |
Target: 5'- gACCaUCgaggCCGAUGCGGCcaccGGUGCgGCAg -3' miRNA: 3'- -UGGaGGa---GGCUACGCCG----CCACGgCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 52950 | 0.72 | 0.291559 |
Target: 5'- cGCCgaugcagcgCCUCUac-GCGGCGGUGCUGCGa -3' miRNA: 3'- -UGGa--------GGAGGcuaCGCCGCCACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 157401 | 0.74 | 0.235341 |
Target: 5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3' miRNA: 3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 38374 | 0.74 | 0.235341 |
Target: 5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3' miRNA: 3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 157675 | 0.74 | 0.228858 |
Target: 5'- gGCCUCCgaaaggcuucggaCGAUGCGGCGcG-GCCGCGc -3' miRNA: 3'- -UGGAGGag-----------GCUACGCCGC-CaCGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 138479 | 0.75 | 0.206368 |
Target: 5'- uACUUCgUUCCGuaccUGCGGCGGuUGCCGCGc -3' miRNA: 3'- -UGGAG-GAGGCu---ACGCCGCC-ACGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 18002 | 0.75 | 0.196792 |
Target: 5'- cACCggCUCUGAcgGCGGCGGgucgGCCGCGg -3' miRNA: 3'- -UGGagGAGGCUa-CGCCGCCa---CGGCGU- -5' |
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24718 | 3' | -62.4 | NC_005264.1 | + | 133431 | 1.07 | 0.001091 |
Target: 5'- gACCUCCUCCGAUGCGGCGGUGCCGCAc -3' miRNA: 3'- -UGGAGGAGGCUACGCCGCCACGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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