miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24718 3' -62.4 NC_005264.1 + 69345 0.69 0.461741
Target:  5'- aACCUCgaCUCUGGcccguuUGUGGCGcGUGUCGCGu -3'
miRNA:   3'- -UGGAG--GAGGCU------ACGCCGC-CACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 157401 0.74 0.235341
Target:  5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3'
miRNA:   3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 133431 1.07 0.001091
Target:  5'- gACCUCCUCCGAUGCGGCGGUGCCGCAc -3'
miRNA:   3'- -UGGAGGAGGCUACGCCGCCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 97600 0.66 0.609806
Target:  5'- cGCUUCCUCgGccGCGGCGGcuacggcucaguauUcuacaGCCGCAg -3'
miRNA:   3'- -UGGAGGAGgCuaCGCCGCC--------------A-----CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 153008 0.67 0.581525
Target:  5'- gACCcUCUCgCGAacgUGCGGCGGcccauguagccgGCCGCGu -3'
miRNA:   3'- -UGGaGGAG-GCU---ACGCCGCCa-----------CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 105514 0.67 0.564102
Target:  5'- cGCCUCUguaucuUUCGAUGCGGaugcgaucgcUGaGUGCCGCu -3'
miRNA:   3'- -UGGAGG------AGGCUACGCC----------GC-CACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 146670 0.66 0.661707
Target:  5'- gACCgaCCUCCGcgcaggGCGGCauUGCCGCc -3'
miRNA:   3'- -UGGa-GGAGGCua----CGCCGccACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 59962 0.66 0.661707
Target:  5'- gUgUCCgcgCCGcucagccacGCGGCGGUGgCCGCGa -3'
miRNA:   3'- uGgAGGa--GGCua-------CGCCGCCAC-GGCGU- -5'
24718 3' -62.4 NC_005264.1 + 95343 0.66 0.640176
Target:  5'- --aUCCgaggcaauggggCCGAcggGCGGCGcGUGCCGCc -3'
miRNA:   3'- uggAGGa-----------GGCUa--CGCCGC-CACGGCGu -5'
24718 3' -62.4 NC_005264.1 + 119877 0.66 0.632336
Target:  5'- gGCCUuucccCCUCCGA---GGCGuUGCCGCGc -3'
miRNA:   3'- -UGGA-----GGAGGCUacgCCGCcACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 89703 0.66 0.601985
Target:  5'- -gCUCCgUCCc-UGCGGCGGUGCUuguuucuGCAc -3'
miRNA:   3'- ugGAGG-AGGcuACGCCGCCACGG-------CGU- -5'
24718 3' -62.4 NC_005264.1 + 33943 0.69 0.479682
Target:  5'- aGCCcgCCgucgUCGAgGaCGaGCGGUGCCGCAa -3'
miRNA:   3'- -UGGa-GGa---GGCUaC-GC-CGCCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 125277 0.66 0.642136
Target:  5'- uGCCgCCUCCGucGCGGUcGUcGCCGCc -3'
miRNA:   3'- -UGGaGGAGGCuaCGCCGcCA-CGGCGu -5'
24718 3' -62.4 NC_005264.1 + 122815 0.67 0.54491
Target:  5'- gACCgCCgCCGAUcugcGUGGCGGU-CCGCGa -3'
miRNA:   3'- -UGGaGGaGGCUA----CGCCGCCAcGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 91616 0.66 0.632336
Target:  5'- uGCCUcugcugcaCCUCCGGga-GGUGGUcGUCGCAa -3'
miRNA:   3'- -UGGA--------GGAGGCUacgCCGCCA-CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 150813 0.66 0.651928
Target:  5'- cGCUucgCCUaaGG-GCGGCGGUcgccGCCGCAg -3'
miRNA:   3'- -UGGa--GGAggCUaCGCCGCCA----CGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 51086 0.67 0.564102
Target:  5'- gACCUgCUUCGcgGuCGcCGGUGCUGCGg -3'
miRNA:   3'- -UGGAgGAGGCuaC-GCcGCCACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 76648 0.72 0.325514
Target:  5'- gACCaUCgaggCCGAUGCGGCcaccGGUGCgGCAg -3'
miRNA:   3'- -UGGaGGa---GGCUACGCCG----CCACGgCGU- -5'
24718 3' -62.4 NC_005264.1 + 38374 0.74 0.235341
Target:  5'- gACCUCCUCCGGcgagaGCGGCGacgccgagacagaUGCCGCGu -3'
miRNA:   3'- -UGGAGGAGGCUa----CGCCGCc------------ACGGCGU- -5'
24718 3' -62.4 NC_005264.1 + 52950 0.72 0.291559
Target:  5'- cGCCgaugcagcgCCUCUac-GCGGCGGUGCUGCGa -3'
miRNA:   3'- -UGGa--------GGAGGcuaCGCCGCCACGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.